BO27971.complete Sequence
646 bp assembled on 2011-06-17
GenBank Submission: KX794800
> BO27971.complete
GAAGTTATCAGTCGACATGGCCCACCAATTGAGCATCCTCTGCTGCGCAC
TTCTGGGAGTGGCTGCTGCTAGCTACATCCCTCATGGTGGATATAGTCAC
GAACACGGCGTGGGGTACAGCATCCAGACGCATCACGAGGCGCCCAAGCA
GTGGCAGGATCACCACCAGGCTCACCACCAATGGGTGGATGTCCCAAAGG
CCCATTCATGGGGCACAGTTCAGGATCATCACCACCAGCAGTGGGCTCCA
GTCGCTGCGCACGATAGCCACCACCAGTGGAGCCACCACGAGGAACCCAA
ACACCATCCCAAATACGAATTCAATTACGGGGTGAAGGACACCAAGACCG
GCGACATCAAGCAGCAGTGGGAGACCCGCGATGGCGACAAGGTCAAGGGA
GGCTACACCATGAAGGAGGCCGACGGACGCACCAGGATCGTTGAGTACAC
CGCCGACTCCCACAACGGATTCCAGGCAACCGTGAAGCATGTGGGACACG
CCAGTCACTTGGAGCACAGCCACTCATATGGCCAGCAATACGGACATGGG
CATGGTCATGCCACCAGCTACGTGGATGTCAAACAGGACACCAGCAGCAA
ATGGGAGGACAAGAGCAACAAGTGGTGGGCAAGCTTTCTAGACCAT
BO27971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Ba-RA | 615 | CG9283-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
| Cpr76Bb-RA | 597 | CG9290-PA | 244..414 | 302..472 | 225 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Ba-RA | 781 | CG9283-RA | 58..669 | 17..628 | 3060 | 100 | Plus |
| Cpr76Bb-RA | 771 | CG9290-RA | 290..460 | 302..472 | 225 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19517664..19518275 | 628..17 | 3060 | 100 | Minus |
| 3L | 28110227 | 3L | 19519938..19520108 | 302..472 | 225 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:50:24 has no hits.
BO27971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:36 Download gff for
BO27971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 1..612 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:47 Download gff for
BO27971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 58..669 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:14 Download gff for
BO27971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Ba-RA | 58..669 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:14 Download gff for
BO27971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19517662..19518275 | 17..630 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:47 Download gff for
BO27971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19510762..19511375 | 17..630 | 99 | | Minus |
BO27971.pep Sequence
Translation from 16 to 646
> BO27971.pep
MAHQLSILCCALLGVAAASYIPHGGYSHEHGVGYSIQTHHEAPKQWQDHH
QAHHQWVDVPKAHSWGTVQDHHHQQWAPVAAHDSHHQWSHHEEPKHHPKY
EFNYGVKDTKTGDIKQQWETRDGDKVKGGYTMKEADGRTRIVEYTADSHN
GFQATVKHVGHASHLEHSHSYGQQYGHGHGHATSYVDVKQDTSSKWEDKS
NKWWASFLDH
BO27971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Ba-PA | 204 | CG9283-PA | 1..204 | 1..204 | 1186 | 100 | Plus |
| Cpr76Bb-PA | 198 | CG9290-PA | 14..196 | 15..190 | 391 | 43.9 | Plus |
| Cpr35B-PA | 218 | CG3474-PA | 3..166 | 4..198 | 277 | 36.4 | Plus |
| Cpr66Cb-PA | 162 | CG7076-PA | 1..162 | 1..171 | 257 | 38.3 | Plus |
| CG34461-PB | 138 | CG34461-PB | 30..120 | 72..168 | 245 | 51.5 | Plus |
