BO27972.complete Sequence
493 bp assembled on 2011-06-17
GenBank Submission: KX796046
> BO27972.complete
GAAGTTATCAGTCGACATGATGGGAAAAGTTACCTATTTGTTGTGCCTGT
GCCTGGCCAGCGCCGTTTGGGCCATTGAATTGCAGGCGGAGCCGGACTAC
GGACCAGTGGCCTACGAGTTCCAGTGGTCGGTGAACGATCCCCACACCGG
CGACATCAAGAGCCAAAAGGAGTCCCGCAAGGACGACAAGGTCGAGGGTG
TCTACGAGCTGATCGATTCCGATGGCTATCGCCGCATAGTGCAGTACAAG
GCGGATGATCACAACGGTTTCGAGGCAATTGTCCAGCGTGAGCCCACGGA
CATCAAGATACCGTTGCCTGAGCCACCCAAGAAGCTCCTGGCCGCCAAGA
TCCTGACTCCCGTGCTACCGGTGGCGCCACTCGTCCACTACGCCGCCCCC
AAGGCCATTATCAAGCAGGAGCTGTCCGCCGGGAACTATGTCTCTGTATC
CGGACCAACAGCACAGTACAAGTACGCAAGCTTTCTAGACCAT
BO27972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr30B-RA | 462 | CG3818-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
| Cpr30F-RA | 441 | CG31876-PA | 163..291 | 143..271 | 240 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr30B-RA | 711 | CG3818-RA | 70..528 | 17..475 | 2295 | 100 | Plus |
| Cpr30F-RA | 827 | CG31876-RA | 234..362 | 143..271 | 240 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9543029..9543475 | 29..475 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 9932737..9932865 | 271..143 | 240 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:50:28 has no hits.
BO27972.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:37 Download gff for
BO27972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 70..528 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:49 Download gff for
BO27972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 70..528 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:15 Download gff for
BO27972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr30B-RA | 70..528 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:15 Download gff for
BO27972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9543029..9543475 | 29..477 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:49 Download gff for
BO27972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9543029..9543475 | 29..477 | 99 | | Plus |
BO27972.pep Sequence
Translation from 16 to 493
> BO27972.pep
MMGKVTYLLCLCLASAVWAIELQAEPDYGPVAYEFQWSVNDPHTGDIKSQ
KESRKDDKVEGVYELIDSDGYRRIVQYKADDHNGFEAIVQREPTDIKIPL
PEPPKKLLAAKILTPVLPVAPLVHYAAPKAIIKQELSAGNYVSVSGPTAQ
YKYASFLDH
BO27972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr30B-PA | 153 | CG3818-PA | 1..153 | 1..153 | 804 | 100 | Plus |
| Cpr30F-PA | 146 | CG31876-PA | 42..145 | 30..141 | 256 | 50 | Plus |
| Ccp84Aa-PA | 205 | CG2360-PA | 48..192 | 20..155 | 229 | 40 | Plus |
| Ccp84Ab-PA | 221 | CG1252-PA | 48..192 | 20..155 | 224 | 39.3 | Plus |
| Ccp84Ad-PA | 199 | CG2341-PA | 51..199 | 23..153 | 216 | 36.7 | Plus |
