BO27975.complete Sequence
331 bp assembled on 2011-06-17
GenBank Submission: KX799842
> BO27975.complete
GAAGTTATCAGTCGACATGAAATTCCTGATCGTCTTTGTAGCAATCTTCG
CTTTTGCTTTGGCTAACGAAGCGCAAATTATTAACTTGGAATCCGATGTT
GGACCCGAAAACTTTCAGTGGTCCTTCGAGACCAGCGATGGCCAGGCGGC
TAACGCTAAGGGACAGTTGAAGTACCCTAACACCGACCACGAGTCCCTTG
CTGTCCAGGGATCCTTCCGCTTCGTTGCCGATGATGGCCAGACCTACGAA
GTCAACTACATCGCCGATGAGAACGGATTCCAGCCCCAGGGTGCCCATCT
TCCCGTTGCCTCCGCAAGCTTTCTAGACCAT
BO27975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ae-RA | 300 | CG10529-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Lcp65Ag1-RA | 318 | CG10530-PA | 205..310 | 209..314 | 410 | 92.5 | Plus |
Lcp65Ag2-RA | 318 | CG10534-PA | 205..310 | 209..314 | 410 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ae-RA | 476 | CG10529-RA | 39..337 | 15..313 | 1495 | 100 | Plus |
Lcp65Ag1-RA | 517 | CG10530-RA | 266..371 | 209..314 | 410 | 92.5 | Plus |
Lcp65Ag2-RA | 543 | CG10534-RA | 266..371 | 209..314 | 410 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6137722..6137911 | 313..124 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6137972..6138080 | 123..15 | 545 | 100 | Minus |
3L | 28110227 | 3L | 6133162..6133267 | 314..209 | 410 | 92.5 | Minus |
3L | 28110227 | 3L | 6134843..6134948 | 314..209 | 410 | 92.5 | Minus |
3L | 28110227 | 3L | 6130559..6130664 | 314..209 | 395 | 91.5 | Minus |
3L | 28110227 | 3L | 6145166..6145289 | 181..304 | 320 | 83.9 | Plus |
3L | 28110227 | 3L | 6147571..6147680 | 314..205 | 295 | 84.5 | Minus |
3L | 28110227 | 3L | 6150442..6150551 | 314..205 | 295 | 84.5 | Minus |
3L | 28110227 | 3L | 6136388..6136482 | 314..220 | 265 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:00:53 has no hits.
BO27975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:03 Download gff for
BO27975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 1..297 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:52 Download gff for
BO27975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 41..337 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:42 Download gff for
BO27975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ae-RA | 41..337 | 17..315 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:42 Download gff for
BO27975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6137720..6137911 | 124..315 | 98 | <- | Minus |
3L | 6137972..6138078 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:52 Download gff for
BO27975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6131072..6131178 | 17..123 | 100 | | Minus |
arm_3L | 6130820..6131011 | 124..315 | 98 | <- | Minus |
BO27975.pep Sequence
Translation from 16 to 331
> BO27975.pep
MKFLIVFVAIFAFALANEAQIINLESDVGPENFQWSFETSDGQAANAKGQ
LKYPNTDHESLAVQGSFRFVADDGQTYEVNYIADENGFQPQGAHLPVASA
SFLDH
BO27975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ae-PA | 99 | CG10529-PA | 1..99 | 1..99 | 513 | 100 | Plus |
Lcp65Ag1-PA | 105 | CG10530-PA | 1..102 | 1..98 | 349 | 67.6 | Plus |
Lcp65Ag2-PA | 105 | CG10534-PA | 1..102 | 1..98 | 349 | 67.6 | Plus |
Lcp65Ag3-PA | 105 | CG18779-PA | 1..102 | 1..98 | 346 | 66.7 | Plus |
Lcp65Af-PA | 100 | CG10533-PA | 1..97 | 1..98 | 327 | 65.3 | Plus |