Clone BO27976 Report

Search the DGRC for BO27976

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCpr78Ca-RA
Protein status:BO27976.pep: Imported from assembly
Sequenced Size:415

Clone Sequence Records

BO27976.complete Sequence

415 bp assembled on 2011-06-17

GenBank Submission: KX793904

> BO27976.complete
GAAGTTATCAGTCGACATGATGTCGTTCGGCAAGATTGTGGTATTCCTGG
TCCTAGTCCTAGTTCAACTAATCCATTGTACGCGCTTTACTGCGCCATCT
TTGGACAGGACCATCTACTACCGGAATACGCCACCCGATCCCTTCGGTCA
CTACAGCTTCGAGTTCCAGACCACCAACGGCATTACCACCAAGGGAGCTG
GTAATGAGAACGGAGCCGTCGGAGTGGTTCAGTTCGTTTCTCCCGAGGGT
ATACCCGTTACCTTCTCGTACGTGGCCGATGCCAATGGATATCAGCCCAC
CGGAGATCACATTCCCGCCATCCCGCTGCACGTTATCCGCCAGTTGGAGT
ACATCCGCACGCATCCACCGGTGGATGAGATTCGGTCCAGACGTTGGGCA
AGCTTTCTAGACCAT

BO27976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Ca-RA 384 CG11310-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Ca-RA 876 CG11310-RA 134..514 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21292222..21292586 397..33 1825 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:01:13 has no hits.

BO27976.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:04 Download gff for BO27976.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Ca-RA 1..381 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:55 Download gff for BO27976.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Ca-RA 134..514 17..399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:51 Download gff for BO27976.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78Ca-RA 134..514 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:51 Download gff for BO27976.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21292220..21292584 35..399 99 <- Minus
3L 21292650..21292667 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:55 Download gff for BO27976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21285320..21285684 35..399 99 <- Minus
arm_3L 21285750..21285767 17..34 100   Minus

BO27976.pep Sequence

Translation from 16 to 415

> BO27976.pep
MMSFGKIVVFLVLVLVQLIHCTRFTAPSLDRTIYYRNTPPDPFGHYSFEF
QTTNGITTKGAGNENGAVGVVQFVSPEGIPVTFSYVADANGYQPTGDHIP
AIPLHVIRQLEYIRTHPPVDEIRSRRWASFLDH

BO27976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78Ca-PA 127 CG11310-PA 1..127 1..127 680 100 Plus
Edg78E-PB 122 CG7673-PB 28..114 35..118 239 49.4 Plus
Edg78E-PA 122 CG7673-PA 28..114 35..118 239 49.4 Plus
Cpr78Cc-PA 119 CG7658-PA 35..117 39..118 237 50.6 Plus
Cpr67Fa2-PA 134 CG18349-PA 38..126 42..126 187 47.2 Plus