BO27976.complete Sequence
415 bp assembled on 2011-06-17
GenBank Submission: KX793904
> BO27976.complete
GAAGTTATCAGTCGACATGATGTCGTTCGGCAAGATTGTGGTATTCCTGG
TCCTAGTCCTAGTTCAACTAATCCATTGTACGCGCTTTACTGCGCCATCT
TTGGACAGGACCATCTACTACCGGAATACGCCACCCGATCCCTTCGGTCA
CTACAGCTTCGAGTTCCAGACCACCAACGGCATTACCACCAAGGGAGCTG
GTAATGAGAACGGAGCCGTCGGAGTGGTTCAGTTCGTTTCTCCCGAGGGT
ATACCCGTTACCTTCTCGTACGTGGCCGATGCCAATGGATATCAGCCCAC
CGGAGATCACATTCCCGCCATCCCGCTGCACGTTATCCGCCAGTTGGAGT
ACATCCGCACGCATCCACCGGTGGATGAGATTCGGTCCAGACGTTGGGCA
AGCTTTCTAGACCAT
BO27976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Ca-RA | 384 | CG11310-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Ca-RA | 876 | CG11310-RA | 134..514 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21292222..21292586 | 397..33 | 1825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:01:13 has no hits.
BO27976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:04 Download gff for
BO27976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Ca-RA | 1..381 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:55 Download gff for
BO27976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Ca-RA | 134..514 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:51 Download gff for
BO27976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr78Ca-RA | 134..514 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:51 Download gff for
BO27976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21292220..21292584 | 35..399 | 99 | <- | Minus |
3L | 21292650..21292667 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:55 Download gff for
BO27976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21285320..21285684 | 35..399 | 99 | <- | Minus |
arm_3L | 21285750..21285767 | 17..34 | 100 | | Minus |
BO27976.pep Sequence
Translation from 16 to 415
> BO27976.pep
MMSFGKIVVFLVLVLVQLIHCTRFTAPSLDRTIYYRNTPPDPFGHYSFEF
QTTNGITTKGAGNENGAVGVVQFVSPEGIPVTFSYVADANGYQPTGDHIP
AIPLHVIRQLEYIRTHPPVDEIRSRRWASFLDH
BO27976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr78Ca-PA | 127 | CG11310-PA | 1..127 | 1..127 | 680 | 100 | Plus |
Edg78E-PB | 122 | CG7673-PB | 28..114 | 35..118 | 239 | 49.4 | Plus |
Edg78E-PA | 122 | CG7673-PA | 28..114 | 35..118 | 239 | 49.4 | Plus |
Cpr78Cc-PA | 119 | CG7658-PA | 35..117 | 39..118 | 237 | 50.6 | Plus |
Cpr67Fa2-PA | 134 | CG18349-PA | 38..126 | 42..126 | 187 | 47.2 | Plus |