Clone BO27978 Report

Search the DGRC for BO27978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptOsi1-RA
Protein status:BO27978.pep: Imported from assembly
Sequenced Size:958

Clone Sequence Records

BO27978.complete Sequence

958 bp assembled on 2011-06-17

GenBank Submission: KX797924

> BO27978.complete
GAAGTTATCAGTCGACATGCTGCTGTGTCGCGTTGTGCTGGCACTGCTGC
TGCTGGTGCTACTCCACTACTGCCAGGCGAAGGATGAAGGTGAAACCACA
CAGCGTGGAGCAGTGCTGGTCTCACTGACTGAGAACATGGCCAAATCGGC
AGGATCGCAGCTCGTCCAAGCCGATCCCTTCATCTCGCGCAACCAGAAGC
AGTGCTTTGAGACCCGCAGTCTGGTGTCCTGCATCAAGTACAAGACCAGC
AAATTGATCTGGAAACTGGCCACTAACAGCATGGGCTTCTTCCCCAGCGA
GTACGGGCGCGATCTGGCCGGGGACAGAGGCCGCTGGCTGAGATTAGTCC
AGTTGGGCGAGCCCGCCGATGAGGTGGTCGTGTTCAACGACGCTAAGAGC
TTAGAAGGTGACAGTGAACTGACGATGATTCTCAAGTTCCTGAAAAGGGC
AATGGAGACGTTTGGGCGAAACCACGGACTCCAACTGAGGCTGAACAGCG
AGGGTGGAGCGAGAGTCATGGAGGAATCGGAAGCACGATTGAAGCGCAAG
AAGAAGAAGTGGCTCATTATCCTGCCCCTCGTCATTCTGATGAAGATTGC
CCACCTGAAGATGACTTTGGTGAGCATGCTGATGGGCGTGCTCGGCATGA
ACGTGCTGCTGGTCGGCGGCGTGGGCTGGCTGATCCACTACCTTAAGTAC
AAGACCATGTGCAAGATCCACCCGCATCTGGTGCAGACGCACTCGCACGT
CTACGAGTCAGATCCCTCGGACTACTCCCAGTTCGTGGGCAGCGGTAGCT
ACTCCAACTCGTACTCCCCGTACAGCTCCGGATCGGGGGCTCCTCACGAG
TTGGGCGGCAATAGCTACAGCAAGGACTGGGCCACGAGTAAGGCCTACAA
CGCGCACAACTATCTTGACACGATCAGCAAGCGGATACAGGCAAGCTTTC
TAGACCAT

BO27978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Osi1-RA 927 CG15585-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Osi1-RA 1161 CG15585-RA 95..1020 15..940 4630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6174420..6174830 530..940 2055 100 Plus
3R 32079331 3R 6173643..6174038 15..410 1980 100 Plus
3R 32079331 3R 6174233..6174359 404..530 635 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:01:41 has no hits.

BO27978.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:05 Download gff for BO27978.complete
Subject Subject Range Query Range Percent Splice Strand
Osi1-RA 1..924 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:01 Download gff for BO27978.complete
Subject Subject Range Query Range Percent Splice Strand
Osi1-RA 97..1020 17..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:58 Download gff for BO27978.complete
Subject Subject Range Query Range Percent Splice Strand
Osi1-RA 97..1020 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:58 Download gff for BO27978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6173645..6174035 17..407 100 -> Plus
3R 6174237..6174359 408..530 100 -> Plus
3R 6174421..6174830 531..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:01 Download gff for BO27978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1999367..1999757 17..407 100 -> Plus
arm_3R 1999959..2000081 408..530 100 -> Plus
arm_3R 2000143..2000552 531..942 99   Plus

BO27978.pep Sequence

Translation from 16 to 958

> BO27978.pep
MLLCRVVLALLLLVLLHYCQAKDEGETTQRGAVLVSLTENMAKSAGSQLV
QADPFISRNQKQCFETRSLVSCIKYKTSKLIWKLATNSMGFFPSEYGRDL
AGDRGRWLRLVQLGEPADEVVVFNDAKSLEGDSELTMILKFLKRAMETFG
RNHGLQLRLNSEGGARVMEESEARLKRKKKKWLIILPLVILMKIAHLKMT
LVSMLMGVLGMNVLLVGGVGWLIHYLKYKTMCKIHPHLVQTHSHVYESDP
SDYSQFVGSGSYSNSYSPYSSGSGAPHELGGNSYSKDWATSKAYNAHNYL
DTISKRIQASFLDH

BO27978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Osi1-PA 308 CG15585-PA 1..308 1..308 1593 100 Plus