Clone BO27980 Report

Search the DGRC for BO27980

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCpr47Ec-RA
Protein status:BO27980.pep: Imported from assembly
Sequenced Size:427

Clone Sequence Records

BO27980.complete Sequence

427 bp assembled on 2011-06-17

GenBank Submission: KX799096

> BO27980.complete
GAAGTTATCAGTCGACATGTGCAAGATCCTTCCTCTTTTCGTCCTGGCGG
TCATGGTGGCCTGTGGTCAAGCTCTTCCCGTAGATCCCGAACGTGAACCC
GTGGCTATCCTGAAGTCCGAGATCATCAAGACAGAGGAGGGCTACACCAG
CGCCTACGTGGGAGCAGATGGTATATCTCGCAACGAGGAGGCTTTTTTGG
TGGACAAGGGTACCGACGAGGAGGCTCTGGAGGTGAAGGGATCCTACAAG
TACATAAACGAAGACGGCCAGGAGGTGGAGGTGTTCTATACGGCGGGAAA
GAACGGATTTGTTCCCTACGGCAGCATTATCAATCCGGAAATCACGGCCG
TTGCCGAAGCAGCCAAGGATCTGCCAAAGGTGGAGAAGGTGGAGAAGGCG
GGTAGGCCTGCAAGCTTTCTAGACCAT

BO27980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ec-RA 396 CG9077-PA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ec-RA 744 CG9077-RA 138..530 17..409 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11259320..11259700 409..29 1905 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:01:45 has no hits.

BO27980.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:05 Download gff for BO27980.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ec-RA 1..393 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:03 Download gff for BO27980.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ec-RA 138..530 17..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:59 Download gff for BO27980.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ec-RA 138..530 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:59 Download gff for BO27980.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11259318..11259700 29..411 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:03 Download gff for BO27980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7146823..7147205 29..411 99 <- Minus

BO27980.pep Sequence

Translation from 16 to 427

> BO27980.pep
MCKILPLFVLAVMVACGQALPVDPEREPVAILKSEIIKTEEGYTSAYVGA
DGISRNEEAFLVDKGTDEEALEVKGSYKYINEDGQEVEVFYTAGKNGFVP
YGSIINPEITAVAEAAKDLPKVEKVEKAGRPASFLDH

BO27980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ec-PA 131 CG9077-PA 1..131 1..131 666 100 Plus
Cpr47Eb-PA 214 CG13224-PA 8..137 4..132 243 43.8 Plus
Cpr78E-PA 137 CG7160-PA 1..122 1..118 210 42.3 Plus
Lcp65Ad-PB 108 CG6955-PB 12..101 13..103 162 39.6 Plus
Lcp65Ad-PA 108 CG6955-PA 12..101 13..103 162 39.6 Plus