BO27980.complete Sequence
427 bp assembled on 2011-06-17
GenBank Submission: KX799096
> BO27980.complete
GAAGTTATCAGTCGACATGTGCAAGATCCTTCCTCTTTTCGTCCTGGCGG
TCATGGTGGCCTGTGGTCAAGCTCTTCCCGTAGATCCCGAACGTGAACCC
GTGGCTATCCTGAAGTCCGAGATCATCAAGACAGAGGAGGGCTACACCAG
CGCCTACGTGGGAGCAGATGGTATATCTCGCAACGAGGAGGCTTTTTTGG
TGGACAAGGGTACCGACGAGGAGGCTCTGGAGGTGAAGGGATCCTACAAG
TACATAAACGAAGACGGCCAGGAGGTGGAGGTGTTCTATACGGCGGGAAA
GAACGGATTTGTTCCCTACGGCAGCATTATCAATCCGGAAATCACGGCCG
TTGCCGAAGCAGCCAAGGATCTGCCAAAGGTGGAGAAGGTGGAGAAGGCG
GGTAGGCCTGCAAGCTTTCTAGACCAT
BO27980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ec-RA | 396 | CG9077-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ec-RA | 744 | CG9077-RA | 138..530 | 17..409 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11259320..11259700 | 409..29 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:01:45 has no hits.
BO27980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:05 Download gff for
BO27980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ec-RA | 1..393 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:03 Download gff for
BO27980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ec-RA | 138..530 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:59 Download gff for
BO27980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ec-RA | 138..530 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:59 Download gff for
BO27980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11259318..11259700 | 29..411 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:03 Download gff for
BO27980.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7146823..7147205 | 29..411 | 99 | <- | Minus |
BO27980.pep Sequence
Translation from 16 to 427
> BO27980.pep
MCKILPLFVLAVMVACGQALPVDPEREPVAILKSEIIKTEEGYTSAYVGA
DGISRNEEAFLVDKGTDEEALEVKGSYKYINEDGQEVEVFYTAGKNGFVP
YGSIINPEITAVAEAAKDLPKVEKVEKAGRPASFLDH
BO27980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ec-PA | 131 | CG9077-PA | 1..131 | 1..131 | 666 | 100 | Plus |
Cpr47Eb-PA | 214 | CG13224-PA | 8..137 | 4..132 | 243 | 43.8 | Plus |
Cpr78E-PA | 137 | CG7160-PA | 1..122 | 1..118 | 210 | 42.3 | Plus |
Lcp65Ad-PB | 108 | CG6955-PB | 12..101 | 13..103 | 162 | 39.6 | Plus |
Lcp65Ad-PA | 108 | CG6955-PA | 12..101 | 13..103 | 162 | 39.6 | Plus |