BO27982.complete Sequence
769 bp assembled on 2011-06-21
GenBank Submission: KX793758
> BO27982.complete
GAAGTTATCAGTCGACATGCGAGGATTTCTGTTACTCTTACTCATTGCTT
CCGTTTCGGCAGCAAAATTGGGCTACAATTACCAAGCTGCTGCTGGCGAC
CGTCGTTTTGCGGGACTCATCGATGCGGAGGCCACAGGATTCAGCTCCAC
ATCTACGCAGCAGCAGCAGCAGCAACAAGCGCAACAGGAGCTTGTGCAGC
AGAACACGCAACAACAGATTCCAGCTGCTGCGGATGAGTTCAGCAAGGAG
TTCTACACCTACGCTGCACCGGAGGAGGAGTTTGCGGATCAGGAGGCTAC
CGAGCACATCGCCAGCATGCTGAAACGCAATCTCCGCGTGCTGTTCATCA
AGTCGCCGGAACACCAAGGTCTCACCAACGCAGCCCTCCAGTTGGCCAAA
CAGGCCAGCGAGCAGCGGACGGCCATCTATGTGCTCAGCAAGCAGGCGGA
TGTGAGTCAGTTGGCGCAGCGCCTGGCCAATGAGAATCAGGCCCAAAGCC
CCAAGCCGGAGGTGCACTTCGTCAAGTACCGCACCCCGGAGGATGCGGTG
CGTGCCCAGCAGCTCATTCAGCAGCAGTTCGACTCCTTGGGCGGCAGCTC
CCGCAGCTCGGACGAGGGTGTCGCCCCCGTTTTGGACTTTAGCTCAGCAC
CAGCGGCCATAAGCGTCCAGGAGCAGAATGAGGCCCAAAATCAGGTTCAG
GCAGTAACTCCTCTCACAAAGTATTTGCCAGCGGCATTGCTGCGCAACAA
GGCAAGCTTTCTAGACCAT
BO27982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 738 | CG14250-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
| Tb-RA | 852 | CG5480-PA | 525..605 | 502..582 | 180 | 81.5 | Plus |
| TwdlN-RA | 930 | CG5476-PA | 696..740 | 502..546 | 180 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 893 | CG14250-RA | 68..802 | 17..751 | 3675 | 100 | Plus |
| Tb-RA | 1031 | CG5480-RA | 614..694 | 502..582 | 180 | 81.5 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 758..802 | 502..546 | 180 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26692637..26693357 | 751..31 | 3605 | 100 | Minus |
| 3R | 32079331 | 3R | 17141471..17141596 | 628..503 | 180 | 76.2 | Minus |
| 3R | 32079331 | 3R | 26622752..26622796 | 546..502 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26624862..26624906 | 546..502 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26628151..26628195 | 546..502 | 180 | 93.3 | Minus |
| 3R | 32079331 | 3R | 26630477..26630521 | 502..546 | 180 | 93.3 | Plus |
| 3R | 32079331 | 3R | 26632626..26632670 | 502..546 | 180 | 93.3 | Plus |
| 3R | 32079331 | 3R | 26657114..26657194 | 502..582 | 180 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:23:26 has no hits.
BO27982.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 12:47:50 Download gff for
BO27982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 1..735 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:08 Download gff for
BO27982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 68..802 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:15 Download gff for
BO27982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 68..802 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:15 Download gff for
BO27982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26692635..26693356 | 32..753 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:08 Download gff for
BO27982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22518357..22519078 | 32..753 | 99 | <- | Minus |
BO27982.pep Sequence
Translation from 16 to 769
> BO27982.pep
MRGFLLLLLIASVSAAKLGYNYQAAAGDRRFAGLIDAEATGFSSTSTQQQ
QQQQAQQELVQQNTQQQIPAAADEFSKEFYTYAAPEEEFADQEATEHIAS
MLKRNLRVLFIKSPEHQGLTNAALQLAKQASEQRTAIYVLSKQADVSQLA
QRLANENQAQSPKPEVHFVKYRTPEDAVRAQQLIQQQFDSLGGSSRSSDE
GVAPVLDFSSAPAAISVQEQNEAQNQVQAVTPLTKYLPAALLRNKASFLD
H
BO27982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-PA | 245 | CG14250-PA | 1..245 | 1..245 | 1203 | 100 | Plus |
| TwdlD-PA | 256 | CG14243-PA | 1..237 | 1..239 | 504 | 47.3 | Plus |
| Tb-PA | 283 | CG5480-PA | 1..243 | 1..230 | 472 | 42.4 | Plus |
| TwdlH-PA | 241 | CG31080-PA | 1..238 | 1..243 | 451 | 42.3 | Plus |
| TwdlK-PA | 247 | CG6460-PA | 1..243 | 1..243 | 448 | 43.3 | Plus |
