BO27992.complete Sequence
277 bp assembled on 2011-06-17
GenBank Submission: KX795508
> BO27992.complete
GAAGTTATCAGTCGACATGAAATTGTTTTTCTTAGTTATTCTGGCCTGTA
TGCTAATCGGAATTGCATGGGGAGAAAACTGCAATAAGCCGTGCGGAAAA
TGCATCTTGCCCACCTGCAATTATGATGGCAAATGTTACTTTGAGGGAAC
TAGCGCTTGTGCTCTGGAAAATGAAAAGTGCCGACGAAAGAAGAATAATC
TTGACCAATTCGTAAAAACCGTGTCTGGGTTCTGTGAGATGGGCGTTAAA
ATGTGTAAAGCAAGCTTTCTAGACCAT
BO27992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp35C-RB | 246 | CG42475-PB | 1..243 | 17..259 | 1215 | 100 | Plus |
| Sfp35C-RA | 246 | CG42475-PA | 1..243 | 17..259 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp35C-RB | 280 | CG42475-RB | 29..271 | 17..259 | 1215 | 100 | Plus |
| Sfp35C-RA | 368 | CG42475-RA | 29..271 | 17..259 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15201822..15201984 | 206..44 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 15201710..15201762 | 259..207 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:51:25 has no hits.
BO27992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:42 Download gff for
BO27992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 29..271 | 17..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:13 Download gff for
BO27992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 29..271 | 17..261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:34 Download gff for
BO27992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfp35C-RA | 29..271 | 17..261 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:34 Download gff for
BO27992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15201706..15201762 | 207..261 | 96 | <- | Minus |
| 2L | 15201822..15201983 | 45..206 | 100 | <- | Minus |
| 2L | 15202037..15202064 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:13 Download gff for
BO27992.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15201822..15201983 | 45..206 | 100 | <- | Minus |
| arm_2L | 15202037..15202064 | 17..44 | 100 | | Minus |
| arm_2L | 15201706..15201762 | 207..261 | 96 | <- | Minus |
BO27992.pep Sequence
Translation from 16 to 277
> BO27992.pep
MKLFFLVILACMLIGIAWGENCNKPCGKCILPTCNYDGKCYFEGTSACAL
ENEKCRRKKNNLDQFVKTVSGFCEMGVKMCKASFLDH
BO27992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfp35C-PB | 81 | CG42475-PB | 1..81 | 1..81 | 458 | 100 | Plus |
| Sfp35C-PA | 81 | CG42475-PA | 1..81 | 1..81 | 458 | 100 | Plus |
