Clone BO27993 Report

Search the DGRC for BO27993

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSfp77F-RA
Protein status:BO27993.pep: Imported from assembly
Sequenced Size:280

Clone Sequence Records

BO27993.complete Sequence

280 bp assembled on 2011-06-17

GenBank Submission: KX795906

> BO27993.complete
GAAGTTATCAGTCGACATGAGAAAGGTCGTGTTAATTTGCTTACTAGCGA
GATTTAGCATCGGATTTCCCCAGGCTCACATATACAAGCCACTTCTTTGT
GAGGAAACCAATGCTAATATAACCAGATCTTCGCTTCTTGCACAATGTGT
AAATCAGGACGAATGTTTTATAAACAGACCAGTAGGTCTATGCCCCAAAC
TTGAAGTTTGCTGCGTTAAAAAACAAGATTTTAACATTGACGAGGTTGAA
TATATGGAAGATGCAAGCTTTCTAGACCAT

BO27993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp77F-RB 249 CG42482-PB 1..246 17..262 1230 100 Plus
Sfp77F-RA 249 CG42482-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp77F-RB 1093 CG42482-RB 20..265 17..262 1230 100 Plus
Sfp77F-RA 319 CG42482-RA 20..265 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20897096..20897262 262..96 835 100 Minus
3L 28110227 3L 20897320..20897398 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:51:38 has no hits.

BO27993.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:42 Download gff for BO27993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp77F-RA 1..246 17..264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:15 Download gff for BO27993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp77F-RA 20..265 17..264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:38 Download gff for BO27993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp77F-RA 20..265 17..264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:38 Download gff for BO27993.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20897094..20897262 96..264 98 <- Minus
3L 20897320..20897398 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:15 Download gff for BO27993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20890194..20890362 96..264 98 <- Minus
arm_3L 20890420..20890498 17..95 100   Minus

BO27993.pep Sequence

Translation from 16 to 280

> BO27993.pep
MRKVVLICLLARFSIGFPQAHIYKPLLCEETNANITRSSLLAQCVNQDEC
FINRPVGLCPKLEVCCVKKQDFNIDEVEYMEDASFLDH

BO27993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp77F-PB 82 CG42482-PB 1..82 1..82 439 100 Plus
Sfp77F-PA 82 CG42482-PA 1..82 1..82 439 100 Plus