Clone BO27994 Report

Search the DGRC for BO27994

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptETH-RA
Protein status:BO27994.pep: Imported from assembly
Sequenced Size:643

Clone Sequence Records

BO27994.complete Sequence

643 bp assembled on 2011-06-29

GenBank Submission: KX798755

> BO27994.complete
GAAGTTATCAGTCGACATGAGAATCATAACAGTCCTGTCTGTTTCGCTCT
TGGTGGGTCTTGTGGCCATAAGCCAGGCAGACGACAGTAGTCCAGGATTC
TTCCTAAAGATCACCAAGAACGTACCGCGGCTGGGCAAGCGAGGCGAGAA
CTTTGCCATAAAGAACCTAAAGACCATTCCTCGCATAGGACGCAGTGAGC
ACAGCTCTGTTACTCCTCTGCTGGCGTGGCTATGGGATTTGGAAACGAGT
CCAAGCAAGCGGCGCTTACCCGCAGGGGAATCCCCAGCGAAGGAGCAGGA
ACTTAACGTGGTGCAGCCCGTCAACTCGAATACGCTCCTTGAGCTGCTTG
ACAACAACGCTATTCCCAGCGAGCAGGTGAAGTTCGTCCACTGGAAGGAT
TTCGATCGTGCCCTCCAGGCAGATGCCGATCTGTACAGCAAGGTTATCCA
GCTGGGACGCCGTCCGGACCAGCACCTCAAGCAGACTCTCAGCTTTGGCA
GCTTCGTTCCCATCTTCGGCGACGAGCAGAATCCGGACTTTATGATGTAC
AAAAACAACGAGGATCAGGAACTTTACGGCGGGGGAAATCGCTACGATCG
CCAATTCCTCAAGTACAACATCCTGGCAAGCTTTCTAGACCAT

BO27994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-RA 612 CG18105-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-RA 755 CG18105-RA 24..633 16..625 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24794792..24795214 625..203 2115 100 Minus
2R 25286936 2R 24795273..24795459 202..16 935 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:30:47 has no hits.

BO27994.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:08 Download gff for BO27994.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 1..609 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:48 Download gff for BO27994.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 25..633 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:53 Download gff for BO27994.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 25..633 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:53 Download gff for BO27994.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24794789..24795214 203..627 99 <- Minus
2R 24795273..24795458 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:48 Download gff for BO27994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20682312..20682737 203..627 99 <- Minus
arm_2R 20682796..20682981 17..202 100   Minus

BO27994.pep Sequence

Translation from 16 to 643

> BO27994.pep
MRIITVLSVSLLVGLVAISQADDSSPGFFLKITKNVPRLGKRGENFAIKN
LKTIPRIGRSEHSSVTPLLAWLWDLETSPSKRRLPAGESPAKEQELNVVQ
PVNSNTLLELLDNNAIPSEQVKFVHWKDFDRALQADADLYSKVIQLGRRP
DQHLKQTLSFGSFVPIFGDEQNPDFMMYKNNEDQELYGGGNRYDRQFLKY
NILASFLDH

BO27994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-PA 203 CG18105-PA 1..203 1..203 1049 100 Plus