BO27995.complete Sequence
340 bp assembled on 2011-06-17
GenBank Submission: KX798975
> BO27995.complete
GAAGTTATCAGTCGACATGAAATTCGCCATCGTCCTGTTCGCCCTCTTTG
CCGTGGCCCTGGCTGCCCCTACTGTCGAGGTCCTGCGATCGGATAGCAAT
GTTGGAATCGATAACTACTCATATGCAGTTGAAACCAGCGACGGTACCTC
GAAGAGCGAGGAGGGTGTGCTGAAGAACGCCGGCACCGAGCTAGAGGCCA
TCTCAACCCACGGCTCCTTCAGCTACGTGGGCCCTGATGGCCAGACCTAC
ACCGTCACCTACGTGGCCGATGAGAACGGATTCCAGCCCCAGGGTGCTCA
TCTGCCCGTTGCCCCCGTTGCCGCAAGCTTTCTAGACCAT
BO27995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Ax1-RA | 309 | CG34270-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
| Cpr65Ax2-RB | 309 | CG18777-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
| Cpr65Ax2-RA | 309 | CG18777-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Ax1-RA | 389 | CG34270-RA | 49..354 | 17..322 | 1530 | 100 | Plus |
| Cpr65Ax2-RB | 732 | CG18777-RB | 48..353 | 17..322 | 1530 | 100 | Plus |
| Cpr65Ax2-RA | 388 | CG18777-RA | 48..353 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6147566..6147761 | 322..127 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 6150437..6150632 | 322..127 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 6147830..6147939 | 126..17 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 6150701..6150810 | 126..17 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 6133157..6133244 | 322..235 | 320 | 90.9 | Minus |
| 3L | 28110227 | 3L | 6134842..6134925 | 318..235 | 315 | 91.7 | Minus |
| 3L | 28110227 | 3L | 6130558..6130641 | 318..235 | 300 | 90.5 | Minus |
| 3L | 28110227 | 3L | 6145140..6145289 | 158..307 | 300 | 80 | Plus |
| 3L | 28110227 | 3L | 6137725..6137830 | 313..208 | 290 | 84.9 | Minus |
| 3L | 28110227 | 3L | 6136387..6136470 | 318..235 | 270 | 88.1 | Minus |
| 3L | 28110227 | 3L | 6139425..6139574 | 307..158 | 225 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6146961..6147032 | 250..321 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 6149832..6149903 | 250..321 | 225 | 87.5 | Plus |
| 3L | 28110227 | 3L | 6143800..6143871 | 236..307 | 195 | 84.7 | Plus |
| 3L | 28110227 | 3L | 6151536..6151619 | 211..294 | 180 | 81 | Plus |
| 2R | 25286936 | 2R | 12408286..12408333 | 259..306 | 180 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:02:19 has no hits.
BO27995.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:06 Download gff for
BO27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax1-RA | 46..351 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:08 Download gff for
BO27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax1-RA | 49..354 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:07 Download gff for
BO27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Ax2-RA | 48..353 | 17..324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:07 Download gff for
BO27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6147564..6147761 | 127..324 | 98 | <- | Minus |
| 3L | 6147830..6147939 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:08 Download gff for
BO27995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6140664..6140861 | 127..324 | 98 | <- | Minus |
| arm_3L | 6140930..6141039 | 17..126 | 100 | | Minus |
BO27995.pep Sequence
Translation from 16 to 340
> BO27995.pep
MKFAIVLFALFAVALAAPTVEVLRSDSNVGIDNYSYAVETSDGTSKSEEG
VLKNAGTELEAISTHGSFSYVGPDGQTYTVTYVADENGFQPQGAHLPVAP
VAASFLDH
BO27995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Ax1-PA | 102 | CG34270-PA | 1..102 | 1..102 | 515 | 100 | Plus |
| Cpr65Ax2-PB | 102 | CG18777-PB | 1..102 | 1..102 | 515 | 100 | Plus |
| Cpr65Ax2-PA | 102 | CG18777-PA | 1..102 | 1..102 | 515 | 100 | Plus |
| Lcp65Ag1-PA | 105 | CG10530-PA | 1..105 | 1..102 | 309 | 60 | Plus |
| Lcp65Ag2-PA | 105 | CG10534-PA | 1..105 | 1..102 | 309 | 60 | Plus |
