Clone BO28090 Report

Search the DGRC for BO28090

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:280
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptObp57e-RA
Protein status:BO28090.pep: Imported from assembly
Sequenced Size:443

Clone Sequence Records

BO28090.complete Sequence

443 bp assembled on 2011-06-17

> BO28090.complete
GAAGTTATCAGTCGACATGTTGGACCAACTTACACTGTGTTTGTTGCTAA
ATTTTCTGTGCGCAAATGTTCTCGCTAACACTTCAGTATTTAATCCGTGT
GTTTCGCAAAATGAGTTATCCGAATATGAAGCCCACCAAGTGATGGAGAA
TTGGCCAGTTCCGCCCATCGATCGGGCTTACAAATGCTTTCTAACATGCG
TCCTCTTGGATTTGGGTCTGATTGATGAACGGGGTAATGTGCAGATCGAT
AAGTACATGAAATCCGGAGTGGTGGACTGGCAATGGGTGGCAATAGAGTT
GGTAACATGTCGCATAGAATTCAGCGACGAAAGGGATCTGTGCGAGCTAT
CATATGGAATCTTCAACTGCTTCAAGGATGTGAAGCTTGCGGCCGAGAAG
TATGTTTCAATTAGTAATGCAAAGGCCAAGCTTTCTAGACCAT

BO28090.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57e-RA 411 CG30145-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57e-RA 411 CG30145-RA 1..408 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547819..20548169 424..74 1755 100 Minus
2R 25286936 2R 20548234..20548291 74..17 290 100 Minus
Blast to na_te.dros performed 2014-11-26 14:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 3939..3981 289..331 107 72.1 Plus

BO28090.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:43 Download gff for BO28090.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57e-RA 6..411 22..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:17 Download gff for BO28090.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57e-RA 6..411 22..425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:40 Download gff for BO28090.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57e-RA 6..411 22..425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:40 Download gff for BO28090.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20547816..20548169 74..427 99 <- Minus
2R 20548235..20548286 22..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:17 Download gff for BO28090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16435321..16435674 74..427 99 <- Minus
arm_2R 16435740..16435791 22..73 100   Minus

BO28090.pep Sequence

Translation from 16 to 442

> BO28090.pep
MLDQLTLCLLLNFLCANVLANTSVFNPCVSQNELSEYEAHQVMENWPVPP
IDRAYKCFLTCVLLDLGLIDERGNVQIDKYMKSGVVDWQWVAIELVTCRI
EFSDERDLCELSYGIFNCFKDVKLAAEKYVSISNAKAKLSRP

BO28090.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57e-PA 136 CG30145-PA 1..136 1..136 725 100 Plus
Obp57d-PB 136 CG30150-PB 31..129 26..120 172 32.3 Plus