BO28096.complete Sequence
787 bp assembled on 2011-09-14
GenBank Submission: KX797120
> BO28096.complete
GAAGTTATCAGTCGACATGAGTGGATTCATTGTCCTATGCCTTTGCTCCG
TGGCTCTAGCCGCACCCCAGGGCTACAACTATAACCCTGGCCCGTCCGGC
TTCGGTGGCATCAGCACCACCACCGGTGGAGGCTCCTTCTTCCAAGGCGC
CGTCCAGGTCGCCCCCGTGCAACCGCAGGCCGTCTACCAACAGCCTGCCG
CACAGACTCACCACCACCAGCAGCAGCAGGTGCAGCAGCAGCAGGCCATC
GTCTCCAAGCGCTTCTTCATCCACTCCGCCCCGGAGGAGGCTGAGGATTA
CAAGGAACGTCACATCACCGTCGGCGTGCCCAAGCGCAACTACAACGTGG
TGTTCATCAAGTCGCCGCAGCGCAACAACAGGAAGACCATCAAGATCAGC
CCCGCCGCCAACGAGGAGAAGACCGTCATCTACGTGCTGAGCAAGAAGGG
CGAAAGCGACTTGAACGCCGAGGTAGTGGAGCAGGCCAGCTCCACCAGCA
AGCCGGAGGTCTTCTTCATCAAGTACAAGACCAACGAAGAGGCCGCCCAC
GCCCAGCAGCAGATCCAAGCCCAGTACGACGCTCTGGGCGGCAGTAGCCA
GTTGACCGATGAGGGAGTGGCCCCAGTCACATCCGTGATTGGAGCGCTGG
GTGGCAGTGACGGTCACATCGACGGCGGATCCGTTGTGGGCGCCACAGGA
GCTGGTCAGATCGTCTCCACCGGCACTGCCGGATCGCACACGGGCAATGC
ATACCTGCCACCCAATTTCGCAAGCTTTCTAGACCAT
BO28096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlV-RA | 756 | CG14640-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
| TwdlY-RA | 744 | CG32570-PA | 485..583 | 495..593 | 270 | 84.8 | Plus |
| Twdlalpha-RA | 1167 | CG32574-PA | 770..855 | 495..580 | 250 | 86 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlV-RA | 1067 | CG14640-RA | 73..825 | 17..769 | 3765 | 100 | Plus |
| TwdlY-RA | 1034 | CG32570-RA | 611..709 | 495..593 | 270 | 84.8 | Plus |
| Twdlalpha-RA | 1354 | CG32574-RA | 846..931 | 495..580 | 250 | 86 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4254854..4255591 | 32..769 | 3690 | 100 | Plus |
| X | 23542271 | X | 16735557..16735655 | 495..593 | 270 | 84.8 | Plus |
| 3R | 32079331 | 3R | 4247807..4247889 | 500..582 | 250 | 86.7 | Plus |
| X | 23542271 | X | 16743774..16743840 | 495..561 | 230 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:12:41 has no hits.
BO28096.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:11 Download gff for
BO28096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 1..753 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:49 Download gff for
BO28096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 73..825 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:49 Download gff for
BO28096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 73..825 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:49 Download gff for
BO28096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4254854..4255591 | 32..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:49 Download gff for
BO28096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 80576..81313 | 32..771 | 99 | | Plus |
BO28096.pep Sequence
Translation from 16 to 787
> BO28096.pep
MSGFIVLCLCSVALAAPQGYNYNPGPSGFGGISTTTGGGSFFQGAVQVAP
VQPQAVYQQPAAQTHHHQQQQVQQQQAIVSKRFFIHSAPEEAEDYKERHI
TVGVPKRNYNVVFIKSPQRNNRKTIKISPAANEEKTVIYVLSKKGESDLN
AEVVEQASSTSKPEVFFIKYKTNEEAAHAQQQIQAQYDALGGSSQLTDEG
VAPVTSVIGALGGSDGHIDGGSVVGATGAGQIVSTGTAGSHTGNAYLPPN
FASFLDH
BO28096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlV-PA | 251 | CG14640-PA | 1..251 | 1..251 | 1294 | 100 | Plus |
| TwdlX-PA | 346 | CG32571-PA | 89..340 | 21..248 | 406 | 40.9 | Plus |
| Twdlalpha-PA | 388 | CG32574-PA | 109..337 | 19..246 | 395 | 43 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 1..275 | 1..250 | 387 | 38.8 | Plus |
| TwdlG-PB | 278 | CG14643-PB | 1..275 | 1..250 | 387 | 38.8 | Plus |
