Clone BO28101 Report

Search the DGRC for BO28101

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG14645-RA
Protein status:BO28101.pep: Imported from assembly
Sequenced Size:325

Clone Sequence Records

BO28101.complete Sequence

325 bp assembled on 2011-06-21

GenBank Submission: KX799803

> BO28101.complete
GAAGTTATCAGTCGACATGAAGGTTCAGCTCGCTCTAACCTCCCTACTAG
TGATTTCTTTTGGCATTGCCCTCGCCTATGATGGTGACGGACAGCCGGGT
TGCAAGACCCAAGCCGAGCTAGACATTGTAGTTTTCCGCAACAATTGGGA
TGCCACATCGTATTGGAAGTGTGAGACACTTAACAAACCAGCCATTGAAA
TCAAGTGCCCCAGCGAAACAGGATTCATGGATAGTCTCAAGAACTGCGTC
AACTGGGAGGAATGGGAATGGGAGAAACCAGTGGAGCCCCTTAGCGAAGC
GGATCAGGCAAGCTTTCTAGACCAT

BO28101.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14645-RA 294 CG14645-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14645-RA 409 CG14645-RA 20..310 17..307 1455 100 Plus
Skp2-RA 2412 CG9772-RA 1884..2174 307..17 1455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4335117..4335407 17..307 1455 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:16:49 has no hits.

BO28101.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 11:09:41 Download gff for BO28101.complete
Subject Subject Range Query Range Percent Splice Strand
CG14645-RA 1..291 17..309 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:47 Download gff for BO28101.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 1892..2186 17..309 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:11 Download gff for BO28101.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 1880..2174 17..309 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:11 Download gff for BO28101.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4335117..4335407 17..309 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:47 Download gff for BO28101.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 160839..161129 17..309 99   Plus

BO28101.pep Sequence

Translation from 16 to 325

> BO28101.pep
MKVQLALTSLLVISFGIALAYDGDGQPGCKTQAELDIVVFRNNWDATSYW
KCETLNKPAIEIKCPSETGFMDSLKNCVNWEEWEWEKPVEPLSEADQASF
LDH

BO28101.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14645-PA 97 CG14645-PA 1..97 1..97 531 100 Plus
CG14245-PB 103 CG14245-PB 29..103 25..99 175 38.7 Plus
CG14245-PA 103 CG14245-PA 29..103 25..99 175 38.7 Plus
Peritrophin-15a-PA 92 CG17814-PA 16..88 12..85 161 39.2 Plus
CG14300-PA 94 CG14300-PA 1..90 1..91 161 34.1 Plus