Clone BO28102 Report

Search the DGRC for BO28102

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG5402-RA
Protein status:BO28102.pep: Imported from assembly
Sequenced Size:496

Clone Sequence Records

BO28102.complete Sequence

496 bp assembled on 2011-06-17

GenBank Submission: KX796661

> BO28102.complete
GAAGTTATCAGTCGACATGAAACTGTTAATATGGTTGTGCCTCCTCGGCT
TCCTGGCCAGTGCCTATGGCATTTTCCTGGACAAGATTACCGGTCGAGGG
GATTCATCTGGAAACGGCCTACTAGACGATATCTTTGGACTCGAAGACTC
GGATAACAGCAGCCACAACAAAACCTCCCAACATGCATTGCCAGCGTCGG
GAATTTTTACTCCGGTTAAAGTAGCTGTTGACGTTATTCAAAATATATGG
GATGAATTTTCTAAGGGAGTTTTAGGCCTTATGGGCAGTTTTGGTACCGG
TGATGATGGAGGCGAATCACCGCCGTCTGGGAATACAGCGCCTGTCACAA
CAGAGTCTAGTTTGCCATCGCAAGAAACCACAACGACTAGAACAACGCCG
TTTACAACAACGGAATCCAGAACGGAATCGGTCTTGGAAACAACCACAAC
AGATTCATCCACGAGTACTTTGCCGCCAGCAAGCTTTCTAGACCAT

BO28102.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-RA 465 CG5402-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-RA 615 CG5402-RA 28..490 16..478 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27502679..27502929 266..16 1255 100 Minus
3R 32079331 3R 27502215..27502429 478..264 1075 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:52:11 has no hits.

BO28102.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:44 Download gff for BO28102.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 29..490 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:26 Download gff for BO28102.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 29..490 17..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:48 Download gff for BO28102.complete
Subject Subject Range Query Range Percent Splice Strand
CG5402-RA 29..490 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:48 Download gff for BO28102.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27502213..27502427 266..480 99 <- Minus
3R 27502680..27502928 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:26 Download gff for BO28102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23327935..23328149 266..480 99 <- Minus
arm_3R 23328402..23328650 17..265 100   Minus

BO28102.pep Sequence

Translation from 16 to 496

> BO28102.pep
MKLLIWLCLLGFLASAYGIFLDKITGRGDSSGNGLLDDIFGLEDSDNSSH
NKTSQHALPASGIFTPVKVAVDVIQNIWDEFSKGVLGLMGSFGTGDDGGE
SPPSGNTAPVTTESSLPSQETTTTRTTPFTTTESRTESVLETTTTDSSTS
TLPPASFLDH

BO28102.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5402-PA 154 CG5402-PA 1..154 1..154 795 100 Plus