BO28107.complete Sequence
1180 bp assembled on 2011-09-14
GenBank Submission: KX796626
> BO28107.complete
GAAGTTATCAGTCGACATGAGACTGCACTTGGCCCTGATCCTTGGATTTT
GCCTAGTTGGCTGGGCCCGCTCGCAGGGCACCAAGTACGGACTGTGGACT
CCGGATCGGGCGCACTCCGATTCTCAGCCCATCCAGTGGACGGGCGGGCA
ATTCGAGTTCCCATGCGCCAGTACCAAGTCGCTCTTCAAGAGCTCCGGAA
AGTTTATACCCAAGAATGTGATTGCCACGCGGGCGCAGCTCATTGGAGAC
ACCATCTATCTGGCTCTGCCGCGCTACAGGAAGGGAGTTCCGGCCACGCT
GGTGAAGACCAGTATCAAGCCGGGCACCTGCTCCACCACCTTTAAGCCCT
ATCCCTGCTGGGACCTCCAGGAGGAGGGCAACTGCAAGGCTCTGCAATCG
GTGGTGGATCTGGTGGTAGACCAAAACGAGGTGCTCTGGGTCTTGGACAC
GGGCATAGTGAACACTCTGGAGACTCCGGTGCGCAAGTGCCCACCAAAAG
TGGTGGCCATGTCGGTGAAGACTGGCAAGGTTCTGAAGACCGTCTCGCTG
GAGGGCCTGACTTCCAGCAATTCCCGTCTCCAATATCTGGTAGTGGACTA
TGCTCCGGATGGCGGCTGCTTTGTCTACGTCAGCGATGCCGCCAATCGGG
CCATCATCGTGTACAATCTCCAGGCGGATCGGGGATTCAGGGTGGTGCTG
CCCAAGGCCGTTACCGCCGGCTGTCGGTCGAGGGATGTCCTCTACATAGC
CCTCATCCGCCGGGACTGCGGCTCAACGGAACTGTACTTCACCTACCTGA
GCACCAACAAACTGTTCTCCCTGAAGTCAGAGTATCTGAGGAGTGGAGTG
GCCGATGGACGCATCTTGGATCTCGGCAAGAAGCCCAGTCGCATGGTCAT
CATCGGCACGGACAACGGCTCGGCGATCTTCTTCCGCAACGAGGGCGACG
CGGAGGTGTACCGCTGGGACACGAACTCCACATTCGTGGAGGCCAACTTC
AAGCCGGTTTACCGCAGTCAGACCTGCCAGCTGGTGACCCATGCTGTGCC
CGATTACAAGCGGAACACGATGCGAGTCCTGCAGAGCAATTTTCCGGATT
ACATGCAGAACCGCGTTGGATGCGGAGCCATTCAGCAGCTGGGTCTGATG
CAGGGCTGTTGGGCAAGCTTTCTAGACCAT
BO28107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g2-RA | 1149 | CG13804-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| yellow-g-RA | 1182 | CG5717-PA | 361..486 | 347..472 | 210 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g2-RA | 1431 | CG13804-RA | 49..1194 | 17..1162 | 5730 | 100 | Plus |
| yellow-g-RA | 1344 | CG5717-RA | 439..564 | 347..472 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2276598..2277450 | 17..869 | 4265 | 100 | Plus |
| 3L | 28110227 | 3L | 2277508..2277801 | 869..1162 | 1470 | 100 | Plus |
| 3L | 28110227 | 3L | 2272270..2272331 | 408..347 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:11:24 has no hits.
BO28107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:05 Download gff for
BO28107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 49..1194 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:09 Download gff for
BO28107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 49..1194 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:17 Download gff for
BO28107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 49..1194 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:17 Download gff for
BO28107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2276598..2277450 | 17..869 | 100 | -> | Plus |
| 3L | 2277509..2277801 | 870..1164 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:09 Download gff for
BO28107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2276598..2277450 | 17..869 | 100 | -> | Plus |
| arm_3L | 2277509..2277801 | 870..1164 | 99 | | Plus |
BO28107.pep Sequence
Translation from 16 to 1180
> BO28107.pep
MRLHLALILGFCLVGWARSQGTKYGLWTPDRAHSDSQPIQWTGGQFEFPC
ASTKSLFKSSGKFIPKNVIATRAQLIGDTIYLALPRYRKGVPATLVKTSI
KPGTCSTTFKPYPCWDLQEEGNCKALQSVVDLVVDQNEVLWVLDTGIVNT
LETPVRKCPPKVVAMSVKTGKVLKTVSLEGLTSSNSRLQYLVVDYAPDGG
CFVYVSDAANRAIIVYNLQADRGFRVVLPKAVTAGCRSRDVLYIALIRRD
CGSTELYFTYLSTNKLFSLKSEYLRSGVADGRILDLGKKPSRMVIIGTDN
GSAIFFRNEGDAEVYRWDTNSTFVEANFKPVYRSQTCQLVTHAVPDYKRN
TMRVLQSNFPDYMQNRVGCGAIQQLGLMQGCWASFLDH
BO28107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g2-PA | 382 | CG13804-PA | 1..382 | 1..382 | 2016 | 100 | Plus |
| yellow-g-PA | 393 | CG5717-PA | 50..377 | 40..369 | 880 | 48.8 | Plus |
| yellow-e-PA | 530 | CG9792-PA | 52..329 | 65..318 | 240 | 29.1 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 78..249 | 60..226 | 229 | 31.4 | Plus |
| y-PA | 541 | CG3757-PA | 22..284 | 32..275 | 221 | 25 | Plus |
