Clone BO28112 Report

Search the DGRC for BO28112

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCp16-RA
Protein status:BO28112.pep: Imported from assembly
Sequenced Size:448

Clone Sequence Records

BO28112.complete Sequence

448 bp assembled on 2011-06-17

GenBank Submission: KX794573

> BO28112.complete
GAAGTTATCAGTCGACATGTCCGCCACCCTACGTCTTCTCTGCCTGATGG
CCTGCTGCGTCGCCCTGGCTGTGGCCAATCGCCCCAACTACGGCGGATCC
GGATACGGAGCCAGCTACGGCGATGTGGTTAAGGCCGCTGAGACCGCCGA
GGCTCAGGCTTCTGCCCTGACCAACGCTGCCGGAGCAGCTGCCTCCGCCG
CCAAGCTGGACGGTGCTGACTGGAATTCCCTCAACCGTTATGGATGGGAG
CAGGGTCGCCCACTTTTGGCCAAGCCCTACGGCCCTCTGGACCCGCTATA
CGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGTCT
TCAAGAAGAGCCAATACGGCGGATCTTACGGCGAGAATGCGTACCTGAAG
ACCGACGCCAAACTGGGTGTTGTGGCCATCGCAAGCTTTCTAGACCAT

BO28112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cp16-RA 417 CG6533-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cp16-RA 522 CG6533-RA 48..461 17..430 2070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8731991..8732321 17..347 1655 100 Plus
3L 28110227 3L 8732453..8732538 345..430 430 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:51:52 has no hits.

BO28112.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:43 Download gff for BO28112.complete
Subject Subject Range Query Range Percent Splice Strand
Cp16-RA 250..663 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:20 Download gff for BO28112.complete
Subject Subject Range Query Range Percent Splice Strand
Cp16-RA 48..461 17..432 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:43 Download gff for BO28112.complete
Subject Subject Range Query Range Percent Splice Strand
Cp16-RA 48..461 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:43 Download gff for BO28112.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8731991..8732321 17..347 100 -> Plus
3L 8732456..8732538 348..432 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:20 Download gff for BO28112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8725091..8725421 17..347 100 -> Plus
arm_3L 8725556..8725638 348..432 97   Plus

BO28112.pep Sequence

Translation from 16 to 448

> BO28112.pep
MSATLRLLCLMACCVALAVANRPNYGGSGYGASYGDVVKAAETAEAQASA
LTNAAGAAASAAKLDGADWNSLNRYGWEQGRPLLAKPYGPLDPLYAAALP
PRSFVAEVDPVFKKSQYGGSYGENAYLKTDAKLGVVAIASFLDH

BO28112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cp16-PA 138 CG6533-PA 1..138 1..138 714 100 Plus