BO28112.complete Sequence
448 bp assembled on 2011-06-17
GenBank Submission: KX794573
> BO28112.complete
GAAGTTATCAGTCGACATGTCCGCCACCCTACGTCTTCTCTGCCTGATGG
CCTGCTGCGTCGCCCTGGCTGTGGCCAATCGCCCCAACTACGGCGGATCC
GGATACGGAGCCAGCTACGGCGATGTGGTTAAGGCCGCTGAGACCGCCGA
GGCTCAGGCTTCTGCCCTGACCAACGCTGCCGGAGCAGCTGCCTCCGCCG
CCAAGCTGGACGGTGCTGACTGGAATTCCCTCAACCGTTATGGATGGGAG
CAGGGTCGCCCACTTTTGGCCAAGCCCTACGGCCCTCTGGACCCGCTATA
CGCTGCTGCTCTGCCACCACGCTCCTTCGTGGCTGAGGTCGATCCAGTCT
TCAAGAAGAGCCAATACGGCGGATCTTACGGCGAGAATGCGTACCTGAAG
ACCGACGCCAAACTGGGTGTTGTGGCCATCGCAAGCTTTCTAGACCAT
BO28112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp16-RA | 417 | CG6533-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp16-RA | 522 | CG6533-RA | 48..461 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8731991..8732321 | 17..347 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 8732453..8732538 | 345..430 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:52 has no hits.
BO28112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:43 Download gff for
BO28112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp16-RA | 250..663 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:20 Download gff for
BO28112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp16-RA | 48..461 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:43 Download gff for
BO28112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp16-RA | 48..461 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:43 Download gff for
BO28112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8731991..8732321 | 17..347 | 100 | -> | Plus |
3L | 8732456..8732538 | 348..432 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:20 Download gff for
BO28112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8725091..8725421 | 17..347 | 100 | -> | Plus |
arm_3L | 8725556..8725638 | 348..432 | 97 | | Plus |
BO28112.pep Sequence
Translation from 16 to 448
> BO28112.pep
MSATLRLLCLMACCVALAVANRPNYGGSGYGASYGDVVKAAETAEAQASA
LTNAAGAAASAAKLDGADWNSLNRYGWEQGRPLLAKPYGPLDPLYAAALP
PRSFVAEVDPVFKKSQYGGSYGENAYLKTDAKLGVVAIASFLDH
BO28112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp16-PA | 138 | CG6533-PA | 1..138 | 1..138 | 714 | 100 | Plus |