Clone BO28115 Report

Search the DGRC for BO28115

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCp19-RA
Protein status:BO28115.pep: Imported from assembly
Sequenced Size:553

Clone Sequence Records

BO28115.complete Sequence

553 bp assembled on 2011-06-17

GenBank Submission: KX796218

> BO28115.complete
GAAGTTATCAGTCGACATGAACAAGTTCGCTACTCTGGCAGTCATCTTCT
GCGCCTGCATCGTGGGCAGCTGCTACGCCAACTACGGTGGCCAGCAGAGC
TACGGACAGCGATCTTACGGTCAGGATAGCTCCGCCGCCTCCGCCGCCAG
CTCAGCAGCTGCTGCTGGAGCCGAGGGTCAGCAGCGTTATGAGCGCCCCG
TGGAGATCATCGCCGGCGGTTACCGCGGCAGCTATGCCCCCGAGATCCTG
CGTCCCATCCAGGTCAGCGGTGGATATGGCGGTGAGCGACGTGGCTACAA
CGGTGGCAACTACCGTCGTGCCGGCTACGGACCCCGTTGGACTGTCCAGC
CCGCCGGTGCCACCCTCCTGTACCCCGGCCAGAACAACTACAAGGCTTAC
GTCTCGCCCCCGGAGTACAGCAAGGTGATCCTGCCCATCCGCCCTGCTGC
TCCAGTGGCCAAGCTTTTCGTCCCAGAGAACCAGTATGGCAACCAGTACG
TTAGCCAGTACTCTGCACCCCGCAGCAGCGGCTACGCAAGCTTTCTAGAC
CAT

BO28115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cp19-RA 522 CG6524-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cp19-RA 651 CG6524-RA 43..562 16..535 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8730012..8730515 32..535 2520 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:53:46 has no hits.

BO28115.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:48 Download gff for BO28115.complete
Subject Subject Range Query Range Percent Splice Strand
Cp19-RA 44..562 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:03 Download gff for BO28115.complete
Subject Subject Range Query Range Percent Splice Strand
Cp19-RA 44..562 17..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:22 Download gff for BO28115.complete
Subject Subject Range Query Range Percent Splice Strand
Cp19-RA 44..562 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:22 Download gff for BO28115.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8730012..8730515 32..537 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:03 Download gff for BO28115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8723112..8723615 32..537 99   Plus

BO28115.pep Sequence

Translation from 16 to 553

> BO28115.pep
MNKFATLAVIFCACIVGSCYANYGGQQSYGQRSYGQDSSAASAASSAAAA
GAEGQQRYERPVEIIAGGYRGSYAPEILRPIQVSGGYGGERRGYNGGNYR
RAGYGPRWTVQPAGATLLYPGQNNYKAYVSPPEYSKVILPIRPAAPVAKL
FVPENQYGNQYVSQYSAPRSSGYASFLDH

BO28115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cp19-PA 173 CG6524-PA 1..173 1..173 919 100 Plus