Clone BO28117 Report

Search the DGRC for BO28117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCp18-RA
Protein status:BO28117.pep: Imported from assembly
Sequenced Size:550

Clone Sequence Records

BO28117.complete Sequence

550 bp assembled on 2011-06-17

GenBank Submission: KX798006

> BO28117.complete
GAAGTTATCAGTCGACATGATGAAGTTCATGTGCATCTGCCTCTGCGCCA
TCTCTGCCGTTTCGGCCAACTCCTACGGACGTTCCCGTGGTGGATACGGT
GGTGCCCCAGTCGGTGGCTATGCCTACCAGGTGCAGCCTGCCCTGACCGT
TAAGGCGATCGTTCCCTCATACGGTGGTGGATACGGCGGAAACCATGGAG
GATATGGCGGTGCCTACGAGTCGGTGCCTGTGCCCGTGTCCTCTGCCTAC
AGCGGTGCCAATGTGGGATCTCAGTACTCCGGTTCCGGCTACGGCGGTGC
CCCACCAGTTGATGCCCAGGCCATTGCCCTCGCCAAGCTCGCCCTGGCCG
CTCCCAGCGCTGGAGCTCCTCTGGTCTGGAAGGAGGCTCCCCGCTACGCC
CAGCCCGTCTATCCCCCCACCAGCTACGTGAACCAGGAGTACGGACACAG
CGAGAAGGTGAAGGGAGGCTCCGCAGCCGCTGCTGCCAGCTCCGTGGCCG
CCGGAAAGAAGGGCTACAAGAGGCCCAGCTACGCAAGCTTTCTAGACCAT

BO28117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-RA 519 CG6517-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-RA 649 CG6517-RA 45..560 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8727023..8727524 31..532 2510 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:53:57 has no hits.

BO28117.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:49 Download gff for BO28117.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..560 17..534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:06 Download gff for BO28117.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..560 17..534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:24 Download gff for BO28117.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..560 17..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:24 Download gff for BO28117.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8727024..8727524 32..534 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:06 Download gff for BO28117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8720124..8720624 32..534 99   Plus

BO28117.pep Sequence

Translation from 16 to 550

> BO28117.pep
MMKFMCICLCAISAVSANSYGRSRGGYGGAPVGGYAYQVQPALTVKAIVP
SYGGGYGGNHGGYGGAYESVPVPVSSAYSGANVGSQYSGSGYGGAPPVDA
QAIALAKLALAAPSAGAPLVWKEAPRYAQPVYPPTSYVNQEYGHSEKVKG
GSAAAAASSVAAGKKGYKRPSYASFLDH

BO28117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-PA 172 CG6517-PA 1..172 1..172 907 100 Plus
CG14191-PA 193 CG14191-PA 55..155 21..116 139 35.6 Plus