Clone BO28120 Report

Search the DGRC for BO28120

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG13084-RA
Protein status:BO28120.pep: Imported from assembly
Sequenced Size:1396

Clone Sequence Records

BO28120.complete Sequence

1396 bp assembled on 2011-06-22

GenBank Submission: KX796488

> BO28120.complete
GAAGTTATCAGTCGACATGAAAGTACTGATCACGTTCTTCTTTCTGGGCG
CCTGCCTCTGCGGCATCCAAGCGGATGAGAGCATCGCTGACCTCTTGAAG
GACAATGCGAAGGGCGTACAGGCAGCCAATGTGCTCCTGACCCGGATTGC
CCAAGTAAGCGAGCAGACTCAGGTCGGTTTGGCAGAGCAAAAGGAGGCAC
TGAAGGCCCTGACGCTCGTGGAGAAGCTGCTAGCCAAGTTGACTGTCGTT
CTGGAGGTTGGCTCCCACAATCTGGTGGCCACCCTTGAGAACCTCTCTAG
GCAGGGCGAGGAATACGGCAATCGAACGGAGTCAGAGCTCCTGGAATTGG
TGCGTCTGCAGGAGGGCACCAAGGAGATACTCAATGTCCTGGAGGCCAAG
CTGGATGCCTATCAGAGGCACGTGCTCCATAGTTCCCGCAACATTGACAA
CAGCATCGACGGACTGGCCAAACTTATTACTAGGACGGTGTTGCCACAAT
TGAATGGGCTAAAGTGTACCTTCGATAGCTTGGAGACGTCCCAAATCAAC
GTGGAGGTGGAGCTGAAGAACTTGGCCGGAGTCAAGGAGCTCAGCGAGAA
CTCCAACTTCAAGCTGAACGTGCTGGAGCATCAATTGAAGCAGCTGAATC
GCACTCAGGAGCAGCGCTTGGACATCCTAATCGATGCAGTCAAGCATTTG
CAGCCCCACAGTTCCTGGAAAGTGGAGGCTGTTCTCCGCGAACTGATCAT
CTCGCAGAAACGCATCGAACTGGGTCTGGAAGAGTGCAGCCGACAACAGC
CCTATCCGCAATATGGCCATCACGACGAGTCCTATCTTCCCACCTACGGA
GCTGAGGTCCCAGAGCCGCAGCATGCTCATCCTAAGCCCAAGCAAGTGGA
TCTGGAACAGGTGTGGAGCATCAAGGAGGAGCCTAAGCACGGAGAGCACT
CTGGAAACCACAAAGCTACCGCCTATGCCCAGTCCCCCGAGCCAAAGAAG
AACTATCAGAGCTCCAGCGCCGTGTCCTGGCGGCAGACGGTGCCGTGGGA
GTACGGATCCCCATACCAGTCCGCTCCAGTTCACCACCATCAGCCATGGA
ACCCAGCTCCGGCCCACGTTCCCACCTCCGTTACCAAGCCCAAGCCGTGC
CCCAAGAAAGAGCACCCTACTCCGGCATCCTATGTTCCTTTGCCACATGA
CCAGCCTGAATCCTACAAGCTTCCTGTGGATTACAGTCCCAAACCTAACC
ACGAGCAACCTCATAAGCCCCACCACGAGCCACAGTCTTACAATGAGGAG
ATCTACAAGCCACAGCCCATCCAGCCAGGAGAATCCTTCAGGATTTGGTA
TGGAGACAGTTCCCTCCCCCAAGGATACGCAAGCTTTCTAGACCAT

BO28120.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-RA 1365 CG13084-PA 1..1362 17..1378 6795 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-RA 1544 CG13084-RA 36..1405 9..1378 6805 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19484965..19485898 9..942 4625 99.7 Plus
2L 23513712 2L 19485956..19486393 941..1378 2190 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:43:48 has no hits.

BO28120.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-22 12:28:10 Download gff for BO28120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 44..1405 17..1380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:04 Download gff for BO28120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 44..1405 17..1380 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:01 Download gff for BO28120.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 44..1405 17..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:01 Download gff for BO28120.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19484973..19485897 17..941 99 -> Plus
2L 19485957..19486393 942..1380 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:04 Download gff for BO28120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19484973..19485897 17..941 99 -> Plus
arm_2L 19485957..19486393 942..1380 99   Plus

BO28120.pep Sequence

Translation from 16 to 1396

> BO28120.pep
MKVLITFFFLGACLCGIQADESIADLLKDNAKGVQAANVLLTRIAQVSEQ
TQVGLAEQKEALKALTLVEKLLAKLTVVLEVGSHNLVATLENLSRQGEEY
GNRTESELLELVRLQEGTKEILNVLEAKLDAYQRHVLHSSRNIDNSIDGL
AKLITRTVLPQLNGLKCTFDSLETSQINVEVELKNLAGVKELSENSNFKL
NVLEHQLKQLNRTQEQRLDILIDAVKHLQPHSSWKVEAVLRELIISQKRI
ELGLEECSRQQPYPQYGHHDESYLPTYGAEVPEPQHAHPKPKQVDLEQVW
SIKEEPKHGEHSGNHKATAYAQSPEPKKNYQSSSAVSWRQTVPWEYGSPY
QSAPVHHHQPWNPAPAHVPTSVTKPKPCPKKEHPTPASYVPLPHDQPESY
KLPVDYSPKPNHEQPHKPHHEPQSYNEEIYKPQPIQPGESFRIWYGDSSL
PQGYASFLDH

BO28120.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-PA 454 CG13084-PA 1..454 1..454 2401 100 Plus
CG4066-PA 588 CG4066-PA 299..533 20..254 268 29.8 Plus
CG13083-PB 316 CG13083-PB 1..306 1..308 212 22.7 Plus