BO28121.complete Sequence
952 bp assembled on 2011-06-17
GenBank Submission: KX793971
> BO28121.complete
GAAGTTATCAGTCGACATGACGAGATCGACCTACATTTGGGCGCTGGCCG
CCTGCCTGATCGCCTGTGCAAGCGCCAACTACGGCAGTTCCCAGGGCTAT
GGACCCGAGTCCGGAAGCGGTGCCTCCGATGGCGGTGCTGATGCCGCTTC
AGCGGCCGCAGCAGCTGCCGGCGGTGCCGGTGGAGCTGGTGGCGAGTACG
GTGGTGCTAACGCCGGTGCTGGTGCTCTCGAATCCGGAGCCGATGCCGCC
GGTGTGGCACAGGCTGGCCAGAGCAGCTACGGATCCGACCAGAACATTCC
GTACAAGCCGGTGAACACCAAGGGTAACACCCTGACCTCATCGATCACCT
ACCCGCAGAACAAGGGCGAGATCCTCATCCATCGTCCCGCTCCCATCATT
GTCAAGCGTCCGCCCACCAAGGTGCTGGTGAACCATCCACCATTGGTGGT
TAAGCCCGCTCCCGTGGTGCTCCACAAGCCCCCAGCAATCGTTCTCCGCA
AGGTCTACGTCAAGCACCACCCACGTCGCGTCAAGGTTGAGCCCGTGTTC
GTCAATGTGGTCAAGCCCCCAGCAGAGAAGTACTTTGTCAACGAGAACAA
GCAGGGCTACGGACAGGGCTCGCAGTCCCACGGACACGGCCATGGACACG
GTGGCCATGGACACGGACACAGCGGACACGGACACGGTGGACACGGTGCT
GGACCCCATGGTCCTGGACCCCATGACGGTGGCCGTGCTCTGCCCGCCTA
CGCTTCGGGAGCTGATTCCGCTGCCGCCAGCGCTGGCTATCAGCTGCTCC
AGAGCGGCAACCAGGGTCTGTCCGCTCTTGCCAACATCGCCGGCGAGCGT
GAGGGTCCCTATGGTCCCGCTCCAAGCCATCAGCACTATAGCGCCGGTCC
AGCCGGACATGGCGGCTATGCTGCTCCCGCCTATGCAAGCTTTCTAGACC
AT
BO28121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-RB | 921 | CG11213-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
| Cp38-RA | 921 | CG11213-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-RB | 1249 | CG11213-RB | 78..995 | 17..934 | 4590 | 100 | Plus |
| Cp38-RA | 1112 | CG11213-RA | 78..995 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8482185..8483057 | 62..934 | 4365 | 100 | Plus |
| X | 23542271 | X | 8481914..8481959 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:54:19 has no hits.
BO28121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:51 Download gff for
BO28121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RB | 78..995 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:12 Download gff for
BO28121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 78..995 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:29 Download gff for
BO28121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 78..995 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:29 Download gff for
BO28121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8481914..8481958 | 17..61 | 100 | -> | Plus |
| X | 8482185..8483057 | 62..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:12 Download gff for
BO28121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8375947..8375991 | 17..61 | 100 | -> | Plus |
| arm_X | 8376218..8377090 | 62..936 | 99 | | Plus |
BO28121.pep Sequence
Translation from 16 to 952
> BO28121.pep
MTRSTYIWALAACLIACASANYGSSQGYGPESGSGASDGGADAASAAAAA
AGGAGGAGGEYGGANAGAGALESGADAAGVAQAGQSSYGSDQNIPYKPVN
TKGNTLTSSITYPQNKGEILIHRPAPIIVKRPPTKVLVNHPPLVVKPAPV
VLHKPPAIVLRKVYVKHHPRRVKVEPVFVNVVKPPAEKYFVNENKQGYGQ
GSQSHGHGHGHGGHGHGHSGHGHGGHGAGPHGPGPHDGGRALPAYASGAD
SAAASAGYQLLQSGNQGLSALANIAGEREGPYGPAPSHQHYSAGPAGHGG
YAAPAYASFLDH
BO28121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-PB | 306 | CG11213-PB | 1..306 | 1..306 | 1648 | 100 | Plus |
| Cp38-PA | 306 | CG11213-PA | 1..306 | 1..306 | 1648 | 100 | Plus |
