Clone BO28123 Report

Search the DGRC for BO28123

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCp7Fc-RA
Protein status:BO28123.pep: Imported from assembly
Sequenced Size:997

Clone Sequence Records

BO28123.complete Sequence

997 bp assembled on 2011-06-17

GenBank Submission: KX796385

> BO28123.complete
GAAGTTATCAGTCGACATGGCAGCCGACGGCAGTTGGCCTATACTACTCT
TGTTGGTCTCAACACAGGCCATTATTCACGCTGAGAATCTAAGTGAATCC
ACGCCCGGCCCCGATGAGGAATACAATGTGAGCACAACTCCGGGTGCGCC
GCTGGAAGAGACCACCAATCGCTTGGCTGCTCGCGTTGAGCCATACGATA
AGGGTGATCGGGAGCAGTACGATGTGATCGATGTGGCCACAGCTACCGGT
ACGGTGATGGGCAAGCCCAGAAGTGGACAGACCACGAGAATCTACACCAC
CGGCGAAGTGGACGAAAGCTTTTGGCTAAAGCATCTTGGCGATGACTTCA
AACATGCCATCCATCTGCAGGTGGGCGGCACCAACGAAGAGTACAATCGC
CTGATTAACCGGACCCAGAACGGTGTCCACGAGGAGGTGCATCACGAGTA
TTTACCGGGGGCCGAACGACCTGGCAGCGCAGTCCAGCCTCCGTCTCCTC
TACCTGCGCCACACCAATCGCGTCCAGCTTATCGTCAGGGTTTCGACAAT
CGAGCCATGGCCATGAAACAGCAGTATCTCATCCATCAGCAGACCCAGCA
ATCGCATCCTGCCCAGCAACGCTATAACTATGCCCAACAGCATGCACAAC
ACTATGCACCACAACCACAACTGCAACCGCAACCACAACCACAACCACAA
TACCCACAGCACACACCGCACAGAAACACGTATGCAATGCCTCAGAATTA
TGGGCAGCAGAACTACAAGCCGCAGAGTTATATTATCAACTCTAGCGAAG
ATCAGCTGCACGCCGAGCAATCGAATCCCTCGCCAATGAAATCAGCTGGA
GAGGATCGACAACATCACGAGGAGGAGTTTGACTCCTTTGGCGGTCAGCT
CAACTTCAAATCACCCTTCAATGACTACGGCAGTCGACCAGCACGAGATC
TCACCTACCTTCTTTATAAGCGGGGTCTTGCAAGCTTTCTAGACCAT

BO28123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fc-RA 966 CG15351-PA 1..962 17..978 4780 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fc-RA 1132 CG15351-RA 2..972 8..978 4810 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8477266..8478160 84..978 4445 99.8 Plus
X 23542271 X 8477118..8477195 8..85 375 98.7 Plus
Blast to na_te.dros performed on 2014-11-26 14:53:15 has no hits.

BO28123.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:47 Download gff for BO28123.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fc-RA 11..973 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:52 Download gff for BO28123.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fc-RA 11..973 17..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:08 Download gff for BO28123.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fc-RA 11..973 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:08 Download gff for BO28123.complete
Subject Subject Range Query Range Percent Splice Strand
X 8477127..8477195 17..85 100 -> Plus
X 8477268..8478161 86..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:52 Download gff for BO28123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8371160..8371228 17..85 100 -> Plus
arm_X 8371301..8372194 86..981 99   Plus

BO28123.pep Sequence

Translation from 16 to 997

> BO28123.pep
MAADGSWPILLLLVSTQAIIHAENLSESTPGPDEEYNVSTTPGAPLEETT
NRLAARVEPYDKGDREQYDVIDVATATGTVMGKPRSGQTTRIYTTGEVDE
SFWLKHLGDDFKHAIHLQVGGTNEEYNRLINRTQNGVHEEVHHEYLPGAE
RPGSAVQPPSPLPAPHQSRPAYRQGFDNRAMAMKQQYLIHQQTQQSHPAQ
QRYNYAQQHAQHYAPQPQLQPQPQPQPQYPQHTPHRNTYAMPQNYGQQNY
KPQSYIINSSEDQLHAEQSNPSPMKSAGEDRQHHEEEFDSFGGQLNFKSP
FNDYGSRPARDLTYLLYKRGLASFLDH

BO28123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fc-PA 321 CG15351-PA 1..321 1..321 1739 100 Plus