BO28124.complete Sequence
1024 bp assembled on 2011-06-17
GenBank Submission: KX798544
> BO28124.complete
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGCGGATAACTTTTGCTTCTACAACGAG
CACTATGATAGTCTTAAAGGTCTAAGTTCTTGGGCATATCAAACGCTAGA
TGCACATCGCAAGGACAAGCGAGATCCCTGCTACAGCTTAGAAGAACTAG
AAAAGTCTCTCACTTATGACGACCTGTGGAACTCGGCGCAACTGCAGCTG
GTACGCGAGGGAAAGATGCACGGCTTTTTGCGCATGTACTGGGCCAAAAA
GATTCTGGAATGGACAGCGACACCGGAGCATGCGTTGGAGTACGCAATCC
TGCTGAACGACAAGTACAGTCTGGATGGTCGCGACCCCAACGGCTATGTG
GGCTGCATGTGGTCCATTGGCGGCGTCCATGACATGGGCTGGAAGGAGCG
GGCTATCTTCGGTAAGGTTAGGTACATGAACTATCAGGGATGCCGTCGCA
AATTCGATGTAAATGCCTTTGTCATGCGATACGGCGGTAAGGTGCACAAG
AAGAAAGCAAGCTTTCTAGACCAT
BO28124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18853-RA | 993 | CG18853-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
| CG12822-RB | 1185 | CG12822-PB | 1..508 | 17..524 | 2540 | 100 | Plus |
| CG12822-RA | 1239 | CG12822-PA | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18853-RA | 1157 | CG18853-RA | 133..1122 | 17..1006 | 4950 | 100 | Plus |
| CG12822-RB | 1468 | CG12822-RB | 134..641 | 17..524 | 2540 | 100 | Plus |
| CG12822-RA | 1522 | CG12822-RA | 134..641 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7829590..7829981 | 264..655 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 7826932..7827284 | 654..1006 | 1765 | 100 | Plus |
| 2R | 25286936 | 2R | 7830042..7830394 | 654..1006 | 1765 | 100 | Plus |
| 2R | 25286936 | 2R | 7832700..7832960 | 264..524 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 7829343..7829532 | 76..265 | 950 | 100 | Plus |
| 2R | 25286936 | 2R | 7832453..7832642 | 76..265 | 950 | 100 | Plus |
| 2R | 25286936 | 2R | 7826739..7826871 | 523..655 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 7829194..7829256 | 17..79 | 315 | 100 | Plus |
| 2R | 25286936 | 2R | 7832304..7832366 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 66..249 | 164 | 59.3 | Plus |
BO28124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:47 Download gff for
BO28124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18853-RA | 138..1127 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:56 Download gff for
BO28124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18853-RA | 133..1122 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:15 Download gff for
BO28124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18853-RA | 133..1122 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:15 Download gff for
BO28124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7829194..7829255 | 17..78 | 100 | -> | Plus |
| 2R | 7829346..7829532 | 79..265 | 100 | -> | Plus |
| 2R | 7829592..7829981 | 266..655 | 100 | -> | Plus |
| 2R | 7830044..7830394 | 656..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:56 Download gff for
BO28124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3716851..3717037 | 79..265 | 100 | -> | Plus |
| arm_2R | 3717097..3717486 | 266..655 | 100 | -> | Plus |
| arm_2R | 3716699..3716760 | 17..78 | 100 | -> | Plus |
| arm_2R | 3717549..3717899 | 656..1008 | 99 | | Plus |
BO28124.pep Sequence
Translation from 16 to 1024
> BO28124.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKADNFCFYNEHYDSLKGLSSWAYQTLDAHRKD
KRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILEWT
ATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAIFGK
VRYMNYQGCRRKFDVNAFVMRYGGKVHKKKASFLDH
BO28124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18853-PA | 330 | CG18853-PA | 1..330 | 1..330 | 1805 | 100 | Plus |
| CG12822-PB | 394 | CG12822-PB | 1..203 | 1..213 | 907 | 83.8 | Plus |
| CG12822-PA | 412 | CG12822-PA | 1..203 | 1..213 | 907 | 83.8 | Plus |
| phr-PB | 535 | CG11205-PB | 375..535 | 170..330 | 899 | 100 | Plus |
| phr-PA | 555 | CG11205-PA | 395..555 | 170..330 | 899 | 100 | Plus |
