BO28133.complete Sequence
1648 bp assembled on 2011-07-18
GenBank Submission: KX796785
> BO28133.complete
GAAGTTATCAGTCGACATGGGTAAATTAAACGTGACAGTGCTGCGATATC
TCACCAAAGAGGACTTCCGCGTCCTCACCGCCATCGAGATGGGCATGAAG
AACCACGAGCTGGTCCCTGGTCCCCTGGCTGCTGCCATTGCGAATCTGAA
GTCGGGTGGAGTCCACAAGCTGCTCAAGGAGCTGTGCAAGCACAAGCTAT
TGGCCTACGAACGGGGAAAGAAATATGATGGCTACCGCTTGACAAACACG
GGCTACGACTATCTGGCTCTGAAGTCTCTCACACTGCGGGGATCGGTCAG
TTCCTTTGGCAACCAGATTGGAATTGGCAAGGAGTCCAACATCTACGTGG
TGGCTGATGAGGAGGGCACTCCAATTTGCCTCAAACTACACCGATTGGGT
CGAACTTGTTTCAGGAATGTAAAAGCCAAAAGAGACTACCACGGTCGCCG
ACACAAGGCCTCCTGGTTGTACTTATCTCGCATCTCGGCTACCCGCGAGT
TTGCCTACATGTCGGCACTCTATGATCGTGGGTTTCCAGTGCCAAAACCC
ATCGATTTCAACCGCCACTGCGTCTTAATGGACCTCGTCAAGGGCTGGCC
CATGACCCAAGTTCACGAACTTCTAGACGCTCCACAAGTTTACGATGATC
TTATGAACCTTATTGTGCGTCTGGGAAATTCTGGAGTTATTCATGGCGAT
TTTAATGAGTTTAATTTAATGGTGACAGACGCCGGCAAGCCCATACTGAT
TGATTTCCCTCAGATGATGTCCACCTCGCATGAAAATGCAGAATTTTTCT
TCGAACGCGATGTTAACTGCGTGCGTGAAATGTTCCGTCGCAAATTTGGT
TACGAAAGCGAAGACTACCCCAAGTTCAGCGACCTGGTGCGTGAGGATGA
TTTGGATGCCGAGGTACATTGCACAGGCTATGGCTTCACTAAGGAGATGG
AGCAGGATCTTCTTGAGGAGTACGGCATGGTGGATCAGGCAGATGAGGAG
GATGAGGGAGAGGATTTGGAAGAGGAGGAAGAGCCTCCCACCTTGGTTAC
CGCAGCATCTGTAGAGATTGACGAGTGCCGACGCCAGGTGGAGAACGAAG
TCATTTATAGCGAAGCCAAGCCCACTCAGAAGTCGGATGACGCAGTGCGT
CGGTACATTGAATCGTGTACGCAATATCTGGGTAATCTCAGCGTAGGTCC
AGAAGTTCCCGATCAAACAATGCCCAAAAAGTTGGACATTTCCCTGCCGG
CTGAAACTCCAGACGTTATTCCATTCGAAGCTGAAACTTCGGCAACTAAT
ACCGTTGAAGAAGACGTCAAGTCCATCAGTTCCAATGATTTAGATACGGA
TGAAGTTCCCGAGCTAGTTGGCCTGGATCCTAACTCCCGCATGTATCGTC
TCAAAATGGTCGAGCAAATGCTAAATGATGCGAGAAGTCAACGCTCCTAT
TCTACCACAACCAGCACAATAGCTCCGTCTGTGATTACCGACCGGATACG
ACGCAACATGGACATTAAGGAGAAGCGGGAGCAGCGAAAGAAGTGTGTGG
CCAAGGGAGAGGCTAGTGCTGTGCATCGTCATCGCAAGGAGAACAAGGAT
GTGGTTAAGGAGTATGCTGGCTGGGACTTCGCAAGCTTTCTAGACCAT
BO28133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK2-RA | 1617 | CG11859-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK2-RA | 1751 | CG11859-RA | 64..1677 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25266849..25267683 | 796..1630 | 4175 | 100 | Plus |
| 3R | 32079331 | 3R | 25266171..25266550 | 225..604 | 1900 | 100 | Plus |
| 3R | 32079331 | 3R | 25265907..25266114 | 17..224 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 25266602..25266793 | 604..795 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 422..523 | 1205..1307 | 125 | 61.9 | Plus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 8939..9040 | 1205..1307 | 125 | 61.9 | Plus |
BO28133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:43 Download gff for
BO28133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11859-RA | 64..1677 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:41 Download gff for
BO28133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11859-RA | 64..1677 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:57 Download gff for
BO28133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK2-RA | 64..1677 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:57 Download gff for
BO28133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25266171..25266549 | 225..603 | 100 | -> | Plus |
| 3R | 25266602..25266793 | 604..795 | 100 | -> | Plus |
| 3R | 25265907..25266114 | 17..224 | 100 | -> | Plus |
| 3R | 25266849..25267683 | 796..1632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:41 Download gff for
BO28133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21091629..21091836 | 17..224 | 100 | -> | Plus |
| arm_3R | 21091893..21092271 | 225..603 | 100 | -> | Plus |
| arm_3R | 21092324..21092515 | 604..795 | 100 | -> | Plus |
| arm_3R | 21092571..21093405 | 796..1632 | 99 | | Plus |
BO28133.pep Sequence
Translation from 16 to 1648
> BO28133.pep
MGKLNVTVLRYLTKEDFRVLTAIEMGMKNHELVPGPLAAAIANLKSGGVH
KLLKELCKHKLLAYERGKKYDGYRLTNTGYDYLALKSLTLRGSVSSFGNQ
IGIGKESNIYVVADEEGTPICLKLHRLGRTCFRNVKAKRDYHGRRHKASW
LYLSRISATREFAYMSALYDRGFPVPKPIDFNRHCVLMDLVKGWPMTQVH
ELLDAPQVYDDLMNLIVRLGNSGVIHGDFNEFNLMVTDAGKPILIDFPQM
MSTSHENAEFFFERDVNCVREMFRRKFGYESEDYPKFSDLVREDDLDAEV
HCTGYGFTKEMEQDLLEEYGMVDQADEEDEGEDLEEEEEPPTLVTAASVE
IDECRRQVENEVIYSEAKPTQKSDDAVRRYIESCTQYLGNLSVGPEVPDQ
TMPKKLDISLPAETPDVIPFEAETSATNTVEEDVKSISSNDLDTDEVPEL
VGLDPNSRMYRLKMVEQMLNDARSQRSYSTTTSTIAPSVITDRIRRNMDI
KEKREQRKKCVAKGEASAVHRHRKENKDVVKEYAGWDFASFLDH
BO28133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK2-PA | 538 | CG11859-PA | 1..538 | 1..538 | 2813 | 100 | Plus |
| RIOK1-PB | 585 | CG11660-PB | 191..395 | 83..276 | 166 | 24.3 | Plus |
| RIOK1-PA | 585 | CG11660-PA | 191..395 | 83..276 | 166 | 24.3 | Plus |
