BO28134.complete Sequence
1639 bp assembled on 2011-07-18
GenBank Submission: KX795847
> BO28134.complete
GAAGTTATCAGTCGACATGCGTTCCGAAATATCTTGCTCCATGGTGCACG
ATCTGCTGGAGTCACAAAAATGCAAATTTGTGCAAACGACACCTGATTGT
CTAATCAATATGAATTTGTTCAACTACCTGGGATGGCATTATTGCAAGGT
GGATGTCCGAAATAGTTTCAATTCCTTCTGGAGTGTGTTGGGCATGTTTC
TGATTACCATTTATGTCTTCTGGATGATGCAAATAACAATAAAAAACTAC
TTCTGTCCAACTTTGATGGTAATCGCAGACTTATTGCGAATGAACGAGAG
CACGGCTGGAGTTACAGTTCTGGCCATTGCAAATGGATCACCGGATTTCT
TCACGGCGATTGCCTCGAGAGTGCAGACCTCCAAGCACTCATTCCTCTCG
TGCATGTCGCAGGCCATGTTTCTGCACATCTTTGTGGCCGGACTGGTGAT
CCTGACCAAGCCCTTCAATATGCGGGCAAACACTTACCTGAGGGATTTCG
GTTTCCTGTTCCTCAATACGGTCTACATGGATTACATCCACAAGCGACCC
AAGGGAATCAGCTGGCTAGCTGCGTTGCCCAGTGCCTTCATATTCGTTGG
CTATGTGGTGGTGGCCATCGTTGATCAGCATTTGCTGATTGCCCGCATTC
AGAAAATGGAGCAAAGACAACTGAATGTGGCTGAGGCGTTGCAGCTGGAG
GAACTGAAGCCGCAGAAGGAGATGCCACTGAAGCGGCAAGAAATCGATCG
ACCCTCCATTGGACACGGAAGTCGAAATAAGCGAATATTCCGGCAATTTT
GGAATACCGTTGCCGAATTCGACAAGGATCGATTTCATCGGGGAACCTTC
CTGGTGAAGCTGTATCTGATAGTGAAGCAACCCATCGATATGTTGTTGAG
AATACTCATTCCAAAGGTCGACATGGAGGCACCCCAGTACGGATGGTCCA
AGCTGCTCTTTAACATCCAGGTGGTTCTTGTACCCACCTACATAGCCTAC
ATAATAGTTCGAGGATATAGCATTGCGGGCTTAGCCGTCTATATGATTGC
GCTGATCCTAATGATTCCTGTGGCTACATTGATATTTTTTCTCACGCGCA
CTGACACCCCGCCCATATTTTTCAGGTTTACATCTGGCGTGGGTTTCATG
GCCGCCGTCTTCCTGATCTTCTGCTTAACCACCGAGGTGAATGCCATGTT
CTTTACGATGGCGACCATATTGCAAGTAAGCCAGGAATTCTCACTTGCCA
CGGCCATTTGCTGGGCACTAAGTAGCAACGATTTGGTGGCCAATCTGTCA
CTGGCCCATCAGGGATGGCCTCGCATGGCAATGACGGCCACATTCTCAGC
ACCAGTATTTGCATCCTTTGTTTTCTTGGCCCTGCCATTGGTGGTGAACT
CGTTTGTAAACGCGCCCGGTAACATATTCCCAACGGAAGGTGGATTTGGG
GAGACGGTTTGCATCTTCTTGGAGGTTGGAATGGGCTTCTCCATGCTTTC
CGTACTAACCACAAACTTTAAGCTGCGACGAGCTTGTGGCTTTCTACTCG
TTTCCTACTACATTTTCTTCGTGGGAGTTCTAATTCTGCTGGAGAAGGGC
GTAATCCATGCATACGGCGTGGCAAGCTTTCTAGACCAT
BO28134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13223-RA | 1584 | CG13223-PA | 1..1581 | 41..1621 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13223-RA | 1769 | CG13223-RA | 71..1675 | 17..1621 | 8025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11256871..11257274 | 250..653 | 2020 | 100 | Plus |
| 2R | 25286936 | 2R | 11257325..11257678 | 654..1007 | 1770 | 100 | Plus |
| 2R | 25286936 | 2R | 11258062..11258297 | 1126..1361 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 11256577..11256809 | 17..249 | 1165 | 100 | Plus |
| 2R | 25286936 | 2R | 11258482..11258673 | 1430..1621 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 11257732..11257852 | 1006..1126 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 11258354..11258422 | 1361..1429 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:14 has no hits.
BO28134.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:40 Download gff for
BO28134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1675 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:21 Download gff for
BO28134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1675 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:38 Download gff for
BO28134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13223-RA | 71..1675 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:38 Download gff for
BO28134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11256577..11256809 | 17..249 | 100 | -> | Plus |
| 2R | 11256871..11257274 | 250..653 | 100 | -> | Plus |
| 2R | 11257325..11257678 | 654..1007 | 100 | -> | Plus |
| 2R | 11257734..11257852 | 1008..1126 | 100 | -> | Plus |
| 2R | 11258063..11258297 | 1127..1361 | 100 | -> | Plus |
| 2R | 11258355..11258422 | 1362..1429 | 100 | -> | Plus |
| 2R | 11258482..11258673 | 1430..1623 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:21 Download gff for
BO28134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7144082..7144314 | 17..249 | 100 | -> | Plus |
| arm_2R | 7144376..7144779 | 250..653 | 100 | -> | Plus |
| arm_2R | 7144830..7145183 | 654..1007 | 100 | -> | Plus |
| arm_2R | 7145239..7145357 | 1008..1126 | 100 | -> | Plus |
| arm_2R | 7145568..7145802 | 1127..1361 | 100 | -> | Plus |
| arm_2R | 7145860..7145927 | 1362..1429 | 100 | -> | Plus |
| arm_2R | 7145987..7146178 | 1430..1623 | 98 | | Plus |
BO28134.pep Sequence
Translation from 16 to 1639
> BO28134.pep
MRSEISCSMVHDLLESQKCKFVQTTPDCLINMNLFNYLGWHYCKVDVRNS
FNSFWSVLGMFLITIYVFWMMQITIKNYFCPTLMVIADLLRMNESTAGVT
VLAIANGSPDFFTAIASRVQTSKHSFLSCMSQAMFLHIFVAGLVILTKPF
NMRANTYLRDFGFLFLNTVYMDYIHKRPKGISWLAALPSAFIFVGYVVVA
IVDQHLLIARIQKMEQRQLNVAEALQLEELKPQKEMPLKRQEIDRPSIGH
GSRNKRIFRQFWNTVAEFDKDRFHRGTFLVKLYLIVKQPIDMLLRILIPK
VDMEAPQYGWSKLLFNIQVVLVPTYIAYIIVRGYSIAGLAVYMIALILMI
PVATLIFFLTRTDTPPIFFRFTSGVGFMAAVFLIFCLTTEVNAMFFTMAT
ILQVSQEFSLATAICWALSSNDLVANLSLAHQGWPRMAMTATFSAPVFAS
FVFLALPLVVNSFVNAPGNIFPTEGGFGETVCIFLEVGMGFSMLSVLTTN
FKLRRACGFLLVSYYIFFVGVLILLEKGVIHAYGVASFLDH
BO28134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13223-PA | 527 | CG13223-PA | 1..527 | 9..535 | 2719 | 100 | Plus |
| CG12376-PA | 617 | CG12376-PA | 23..606 | 5..535 | 525 | 25.8 | Plus |
| CG14744-PC | 620 | CG14744-PC | 26..611 | 5..533 | 514 | 25.2 | Plus |
| CG5348-PB | 625 | CG5348-PB | 31..612 | 5..533 | 475 | 25 | Plus |
| CG14743-PB | 611 | CG14743-PB | 24..601 | 5..533 | 457 | 22.6 | Plus |
