BO28135.complete Sequence
1279 bp assembled on 2011-06-17
GenBank Submission: KX793852
> BO28135.complete
GAAGTTATCAGTCGACATGACGGCTGAGACAGGAACAGCGCCTATGCCCA
CCTGGCTGAGAGCAAATCTATTCGAAGAATTGCTAAGTAAACGTTACGGC
GGCAATTATGCCGGAATCAAAAGTTTCAAGCCGGAAGCCGGGCTCAAGCC
GGGAGAAAACTACTCCACAATTATGCTGCGCCTCAAGCTTGAAGTCGAAC
TGCAGGATCACACAATCGAAAATGTGAGCTATATGCTGAAGACTCCCTAT
GATTTCGAGATGTATCGCGAGATTCTGAGGAAGAACAACATGTTTGCTGT
GGAGAGGGATGTGTTCATTCAGGTGATTCCCGAGCTGGAACAGATGTACA
AGGATGTGGGCGTGGAGGTCAAGTTTGGGGCCAAGGCTTATGAAATCGAC
GCGCCCGATGATTACGTACTTCTGCAGGATCTGGGTCCTTTGGGTTTCAG
GAACGTCGATCGCCTGGAGGGCCTAGACATGGTTCACACCAAGTGTGTTC
TAAAGAAGATGGCCCAGTGGCATGCGGTATCGGCCACCAGGATCCATCTC
AAGGGTCCGTACCCCCAGAACTACTTGCAACCCACGTACGCCGATACCAT
GAAGGAGAGCATCGAACAGGTGGCTGAAACCTTGGGCAAGTATTTCCTCA
AGTGCCTGCCACTCTACGAGGGTTACGAGGAGTACAGTGCGGCGGTTCAC
AAGATGCAACCTAAAATCGTCGACCTTATGTATGCTATGAACACGCCCGA
TCCGCAGGACTTCAATGCTCTGAATCATGGAGATTGCTGGACCAGCAACA
TCATGTTTAAGTACGAGGACGAGTCGCCCGAACCGATCGAGACATATTTC
GTGGATCTCCAACTGCCCAAGGTCACGAGCGTGGCATATGATCTGATCTA
TTTCCTCCTGGGCTCGACGAAATTCGAAATCCAATTGAGTCAGTTCGATT
ACTTCATCAAGTACTACCACGATCACCTGGTCGAGCACTTGAGAATGCTG
AACTACCCCGAAGCAAAAACCCCCACGTTGGGGTTCCTCCATACTCAGCT
ATTGAAATATGGACGAGTTGGGTATCACATTGCTTTTATTCTCTGCCCAC
CAGTGCTGCTCGATCGGACTGAAGATGCAAATCTGACCGATTTCGTCACC
GAGACGGATAATGGCGATGGTCTAAAGTTGGCTATGTACTCCAATGCCCG
ATATAAGAAGCACGTTAGCGCCATTCTCAAATGGTTGAACAATCGAGGGG
CCTTCCAGTGCGCAAGCTTTCTAGACCAT
BO28135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10559-RB | 1248 | CG10559-PB | 1..1245 | 17..1261 | 6225 | 100 | Plus |
| CG10560-RA | 1245 | CG10560-PA | 325..529 | 323..527 | 245 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10559-RB | 1435 | CG10559-RB | 13..1257 | 17..1261 | 6225 | 100 | Plus |
| CG10560-RA | 1367 | CG10560-RA | 370..574 | 323..527 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25315368..25315859 | 697..206 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 25314927..25315300 | 1071..698 | 1870 | 100 | Minus |
| 3R | 32079331 | 3R | 25314672..25314863 | 1261..1070 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 25315915..25316104 | 206..17 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 25319469..25319673 | 527..323 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:39 has no hits.
BO28135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:51 Download gff for
BO28135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 13..1257 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:19 Download gff for
BO28135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 13..1257 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:35 Download gff for
BO28135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10559-RB | 13..1257 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:35 Download gff for
BO28135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25314670..25314862 | 1071..1263 | 98 | <- | Minus |
| 3R | 25314928..25315300 | 698..1070 | 100 | <- | Minus |
| 3R | 25315368..25315858 | 207..697 | 100 | <- | Minus |
| 3R | 25315915..25316104 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:19 Download gff for
BO28135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21140392..21140584 | 1071..1263 | 98 | <- | Minus |
| arm_3R | 21140650..21141022 | 698..1070 | 100 | <- | Minus |
| arm_3R | 21141090..21141580 | 207..697 | 100 | <- | Minus |
| arm_3R | 21141637..21141826 | 17..206 | 100 | | Minus |
BO28135.pep Sequence
Translation from 16 to 1279
> BO28135.pep
MTAETGTAPMPTWLRANLFEELLSKRYGGNYAGIKSFKPEAGLKPGENYS
TIMLRLKLEVELQDHTIENVSYMLKTPYDFEMYREILRKNNMFAVERDVF
IQVIPELEQMYKDVGVEVKFGAKAYEIDAPDDYVLLQDLGPLGFRNVDRL
EGLDMVHTKCVLKKMAQWHAVSATRIHLKGPYPQNYLQPTYADTMKESIE
QVAETLGKYFLKCLPLYEGYEEYSAAVHKMQPKIVDLMYAMNTPDPQDFN
ALNHGDCWTSNIMFKYEDESPEPIETYFVDLQLPKVTSVAYDLIYFLLGS
TKFEIQLSQFDYFIKYYHDHLVEHLRMLNYPEAKTPTLGFLHTQLLKYGR
VGYHIAFILCPPVLLDRTEDANLTDFVTETDNGDGLKLAMYSNARYKKHV
SAILKWLNNRGAFQCASFLDH
BO28135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10559-PB | 415 | CG10559-PB | 1..415 | 1..415 | 2211 | 100 | Plus |
| CG10562-PA | 405 | CG10562-PA | 3..404 | 7..414 | 965 | 45.7 | Plus |
| CHKov1-PE | 410 | CG10618-PE | 6..406 | 10..412 | 936 | 45 | Plus |
| CG10560-PA | 414 | CG10560-PA | 16..414 | 9..414 | 926 | 44.8 | Plus |
| CG10553-PA | 414 | CG10553-PA | 17..414 | 10..414 | 902 | 44.4 | Plus |
