BO28136.complete Sequence
577 bp assembled on 2011-06-17
GenBank Submission: KX797873
> BO28136.complete
GAAGTTATCAGTCGACATGCGGACAGGGCGTATACTTGTTGCTTTGATTT
TTCTAGGTTTAATAATTCCCTTTCGGGCTGCAAAGTGCAGGGCAGCGCCC
AAATCTGTGCAAAATGTACACGTTTGTTGCTCAGCACCCCTGCCTAACTG
GGGAGTTTTCAACAGAGAGTGTCATAAATCGGCCATTCAAGCAAGTTGCC
GTTTAGATTGCGATTTCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTG
ATCCAAGCGAAAGTTCGACCCATGTTGGAGCGCGCCTTTTCCAACGAACC
CACCATCGATGCATATGAGTCCAACTTTGCCAAATGTTCAACGGTGGTCA
GGAGCAAATACCAGGAGCTATCTCCGCTGAGTCGTCAAAGCGACGCCTGT
GACAGACACGCCCTCTTCTACAGCCTTTGTGCGTATGCTCGCTTGATTTT
CACCTGTCCGGACAAAATGTGGCAAAGAAATAACAGGATGTGCCAGGAGG
CCAAGGCCTATGCGAAAAAATGTCCTTGGCCAGCGCTAAAAATGTTTATG
AGGAATACCGCAAGCTTTCTAGACCAT
BO28136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp50a-RA | 546 | CG30067-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Obp50a-RB | 603 | CG30067-PB | 238..600 | 197..559 | 1815 | 100 | Plus |
Obp50a-RB | 603 | CG30067-PB | 1..180 | 17..196 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp50a-RA | 671 | CG30067-RA | 93..635 | 17..559 | 2715 | 100 | Plus |
Obp50a-RB | 728 | CG30067-RB | 330..692 | 197..559 | 1815 | 100 | Plus |
Obp50a-RB | 728 | CG30067-RB | 93..272 | 17..196 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14370367..14370729 | 559..197 | 1815 | 100 | Minus |
2R | 25286936 | 2R | 14370929..14371024 | 112..17 | 480 | 100 | Minus |
2R | 25286936 | 2R | 14370787..14370875 | 196..108 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:53 has no hits.
BO28136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:52 Download gff for
BO28136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp50a-RA | 93..635 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:27 Download gff for
BO28136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp50a-RA | 93..635 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:41 Download gff for
BO28136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp50a-RA | 93..635 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:41 Download gff for
BO28136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14370365..14370729 | 197..561 | 99 | <- | Minus |
2R | 14370787..14370870 | 113..196 | 100 | <- | Minus |
2R | 14370929..14371024 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:27 Download gff for
BO28136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10257870..10258234 | 197..561 | 99 | <- | Minus |
arm_2R | 10258292..10258375 | 113..196 | 100 | <- | Minus |
arm_2R | 10258434..10258529 | 17..112 | 100 | | Minus |
BO28136.pep Sequence
Translation from 16 to 577
> BO28136.pep
MRTGRILVALIFLGLIIPFRAAKCRAAPKSVQNVHVCCSAPLPNWGVFNR
ECHKSAIQASCRLDCDFNASSVLQGNRLIQAKVRPMLERAFSNEPTIDAY
ESNFAKCSTVVRSKYQELSPLSRQSDACDRHALFYSLCAYARLIFTCPDK
MWQRNNRMCQEAKAYAKKCPWPALKMFMRNTASFLDH
BO28136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp50a-PA | 181 | CG30067-PA | 1..181 | 1..181 | 972 | 100 | Plus |
Obp50a-PB | 200 | CG30067-PB | 1..200 | 1..181 | 942 | 90.5 | Plus |
Obp50d-PA | 173 | CG30074-PA | 1..170 | 6..169 | 170 | 24.6 | Plus |