Clone BO28136 Report

Search the DGRC for BO28136

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptObp50a-RA
Protein status:BO28136.pep: Imported from assembly
Sequenced Size:577

Clone Sequence Records

BO28136.complete Sequence

577 bp assembled on 2011-06-17

GenBank Submission: KX797873

> BO28136.complete
GAAGTTATCAGTCGACATGCGGACAGGGCGTATACTTGTTGCTTTGATTT
TTCTAGGTTTAATAATTCCCTTTCGGGCTGCAAAGTGCAGGGCAGCGCCC
AAATCTGTGCAAAATGTACACGTTTGTTGCTCAGCACCCCTGCCTAACTG
GGGAGTTTTCAACAGAGAGTGTCATAAATCGGCCATTCAAGCAAGTTGCC
GTTTAGATTGCGATTTCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTG
ATCCAAGCGAAAGTTCGACCCATGTTGGAGCGCGCCTTTTCCAACGAACC
CACCATCGATGCATATGAGTCCAACTTTGCCAAATGTTCAACGGTGGTCA
GGAGCAAATACCAGGAGCTATCTCCGCTGAGTCGTCAAAGCGACGCCTGT
GACAGACACGCCCTCTTCTACAGCCTTTGTGCGTATGCTCGCTTGATTTT
CACCTGTCCGGACAAAATGTGGCAAAGAAATAACAGGATGTGCCAGGAGG
CCAAGGCCTATGCGAAAAAATGTCCTTGGCCAGCGCTAAAAATGTTTATG
AGGAATACCGCAAGCTTTCTAGACCAT

BO28136.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50a-RA 546 CG30067-PA 1..543 17..559 2715 100 Plus
Obp50a-RB 603 CG30067-PB 238..600 197..559 1815 100 Plus
Obp50a-RB 603 CG30067-PB 1..180 17..196 900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50a-RA 671 CG30067-RA 93..635 17..559 2715 100 Plus
Obp50a-RB 728 CG30067-RB 330..692 197..559 1815 100 Plus
Obp50a-RB 728 CG30067-RB 93..272 17..196 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14370367..14370729 559..197 1815 100 Minus
2R 25286936 2R 14370929..14371024 112..17 480 100 Minus
2R 25286936 2R 14370787..14370875 196..108 430 98.9 Minus
Blast to na_te.dros performed on 2014-11-26 14:54:53 has no hits.

BO28136.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:52 Download gff for BO28136.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..635 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:27 Download gff for BO28136.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..635 17..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:41 Download gff for BO28136.complete
Subject Subject Range Query Range Percent Splice Strand
Obp50a-RA 93..635 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:41 Download gff for BO28136.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14370365..14370729 197..561 99 <- Minus
2R 14370787..14370870 113..196 100 <- Minus
2R 14370929..14371024 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:27 Download gff for BO28136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10257870..10258234 197..561 99 <- Minus
arm_2R 10258292..10258375 113..196 100 <- Minus
arm_2R 10258434..10258529 17..112 100   Minus

BO28136.pep Sequence

Translation from 16 to 577

> BO28136.pep
MRTGRILVALIFLGLIIPFRAAKCRAAPKSVQNVHVCCSAPLPNWGVFNR
ECHKSAIQASCRLDCDFNASSVLQGNRLIQAKVRPMLERAFSNEPTIDAY
ESNFAKCSTVVRSKYQELSPLSRQSDACDRHALFYSLCAYARLIFTCPDK
MWQRNNRMCQEAKAYAKKCPWPALKMFMRNTASFLDH

BO28136.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Obp50a-PA 181 CG30067-PA 1..181 1..181 972 100 Plus
Obp50a-PB 200 CG30067-PB 1..200 1..181 942 90.5 Plus
Obp50d-PA 173 CG30074-PA 1..170 6..169 170 24.6 Plus