BO28137.complete Sequence
1264 bp assembled on 2011-07-18
GenBank Submission: KX799145
> BO28137.complete
GAAGTTATCAGTCGACATGAAAGTGGTCGGCAGTTTGCATATCCTCTATT
CGCTGGCGATCTTAGTATCCCTACATTCTCTCGTCGCGGGAAACTCTTCG
GTGGTGGCGGTGACCCACGAAAACTTGCAAGGAATAATCGATTCTAATGA
GTTGGTTCTGCTTAGTTTTTACACGGATTGGTGCCGTTTTAGCCAGATTT
TGCAGCCCATTTTTGAGGAGGCGGCGGCGAAGGTTATACAGAAATTCCCT
GAAAACGGCCGTGTGATCCTGGGAAAAGTAAACTGCGACACTGAAGATAT
ATTGGCCGATCAGTTTGACATACTTAAGTACCCAACGATAAAGATCGTCA
GGAATGGATTGATTGGCAATCAGGAATACCGTGGCCAGAGATCGGTGGAG
GCCCTTTTCCAGTTCGTGGAAAAGGAGCTATCAGATCCAATCAAAGAGTT
CCATAACATTGATGACCTTAAAAACGTGGATGTTGGGTATGGAATAGTCA
TTGGTTATTTCATTTCCAAGGATCATGCTGAGTATGATAACTATCGCAGG
GTAGCGAGCCTTTTGCGCAACGATTGTAGGTTCCTTGTGGGCTTTGGTGA
CTTGACTAAGGACCTCCGACCGCCAGGAAAGAACGCGTTGATCTTCCGAG
GCGATCCATCGATTCCGAATCACAAAAACCAGTACAGTGAGTACTTGGGC
AACATGACCAGCTTTAAAGAACTAACCTTTTGGATCGATAAGACGTGTGT
GCCCCTGGTGCGAGAGGTCACCTTCGATAATGCAGAGGAACTATCGGAGG
AAGGATTACCATTTGTATTGCTATTTTACAACAAGGACGATCTAAGTCCC
ATCCAGGAGTTCAAGAACGCAATTCAAAGCCAGATGGAAAATGAGACGAG
GGTTATTTTCCTGACTGCCGAAGGAGAAGTCTTTAAGCACCCACTTTTCC
ATTTGGGAAAGTCCCCGAGTGATTTGCCAGTGATCGCAATCGATTCCTTC
ATGCACATGTACCTATTTCCACGCTTCCAGGACATTTACGATCCAGGTGC
CCTCAAAAAGTTCATTGATGACCTGTTCAGCGGTGCACTGCATTATAATT
ACCATGTGGCCCAGCAGGCTAAGGAAGATTTGGAGTCCATTATCGATCCA
ACTGAAGACCTGCCAGTCGTTCACGAGTCCAAGTTTAAGGACCTCAAGCC
ATCCAAGCACCGTTACACGTTGGTCAACCGCACAAGGGACGAGCTAGCAA
GCTTTCTAGACCAT
BO28137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10029-RB | 1233 | CG10029-PB | 1..1230 | 17..1246 | 6135 | 99.9 | Plus |
| CG10029-RA | 1233 | CG10029-PA | 1..1230 | 17..1246 | 6135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10029-RB | 1665 | CG10029-RB | 39..1268 | 17..1246 | 6135 | 99.9 | Plus |
| CG10029-RA | 1380 | CG10029-RA | 39..1268 | 17..1246 | 6135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7315836..7316504 | 1246..578 | 3345 | 100 | Minus |
| 3R | 32079331 | 3R | 7316605..7317169 | 581..17 | 2810 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:37:40 has no hits.
BO28137.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:43 Download gff for
BO28137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 39..1268 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:54 Download gff for
BO28137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 39..1268 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:11 Download gff for
BO28137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10029-RA | 39..1268 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:11 Download gff for
BO28137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7315834..7316502 | 580..1248 | 99 | <- | Minus |
| 3R | 7316607..7317169 | 17..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:54 Download gff for
BO28137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3141556..3142224 | 580..1248 | 99 | <- | Minus |
| arm_3R | 3142329..3142891 | 17..579 | 99 | | Minus |
BO28137.pep Sequence
Translation from 16 to 1264
> BO28137.pep
MKVVGSLHILYSLAILVSLHSLVAGNSSVVAVTHENLQGIIDSNELVLLS
FYTDWCRFSQILQPIFEEAAAKVIQKFPENGRVILGKVNCDTEDILADQF
DILKYPTIKIVRNGLIGNQEYRGQRSVEALFQFVEKELSDPIKEFHNIDD
LKNVDVGYGIVIGYFISKDHAEYDNYRRVASLLRNDCRFLVGFGDLTKDL
RPPGKNALIFRGDPSIPNHKNQYSEYLGNMTSFKELTFWIDKTCVPLVRE
VTFDNAEELSEEGLPFVLLFYNKDDLSPIQEFKNAIQSQMENETRVIFLT
AEGEVFKHPLFHLGKSPSDLPVIAIDSFMHMYLFPRFQDIYDPGALKKFI
DDLFSGALHYNYHVAQQAKEDLESIIDPTEDLPVVHESKFKDLKPSKHRY
TLVNRTRDELASFLDH
BO28137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10029-PB | 410 | CG10029-PB | 1..410 | 1..410 | 2137 | 100 | Plus |
| CG10029-PA | 410 | CG10029-PA | 1..410 | 1..410 | 2137 | 100 | Plus |
| CG9911-PA | 412 | CG9911-PA | 8..412 | 4..410 | 1040 | 49.9 | Plus |
| CG9911-PB | 412 | CG9911-PB | 8..412 | 4..410 | 1040 | 49.9 | Plus |
| CG9911-PD | 412 | CG9911-PD | 8..412 | 4..410 | 1040 | 49.9 | Plus |
