BO28138.complete Sequence
871 bp assembled on 2011-06-21
GenBank Submission: KX796436
> BO28138.complete
GAAGTTATCAGTCGACATGTTTCTTGTGGCAAGAAGTTTTGCCCCAATTA
ACTCGGGGACAAGAAGTCATTTTGGATTCAATTATGATAAACAGGGAAGG
GATTGGAATGTAAAGTGCGGTGAAAGACAATCGCCCATTGCACTGTGGTC
ATGCAATGCCATTACATGTAATGTACCCAAACTGAAGTTCCTGAATTACC
ATAAGAGCCTGTGCGATCCTTTATCCGTGATCAACAATGGGCTAACAGTT
CTCATGCGGATACCCAAGACCGTCGACGGCAGTCGGCCATCCCTTTGCAT
CAGTACTGAAGGCCAACAGGTCTTCGAGGCCGACCAGTTGCACTTTCACT
GGGGCTCCGCACTGAGCAAGGGATCGGAGCACTGCTTGGATGGCAACTAT
TACGATGGGGAGGTGCACATCGTTCACAAGAATGCCAGTTACAAAAGCAA
CAAGGAGGCCGGTCTGCAGCCGAATGGCTTTGCGGTTTTGGCCCTGTTCA
TAAGGAACCTTGAGGATCCGAACATCGAGACGCCAGCTATGAACATGATC
TGTAAACAGGTATCCAGCATAACTAAGTTGGATGATTCGTGTCCTCTGGA
GGACAGCATGGCTTTGCAGGACCTTTTTGCTAGCATAGACAGCCAAAAAT
ACTTCACCTACCAAGGTTCGCTTACTACTCCTCCCTGTGCCGAGGCAGTC
ATCTGGTTTGTTTTCCCGACTCCTCTCGATGTTCCCAAGGAGCTGTGGAA
GCACTTTTGGCAACTGAGGGACTCTCGTGACCAGCGCGTCCTTAACACCT
ACAGGGAACTGCAAGATGGCCATGACCGACCAGTTTATAGAAGTAAAGCA
AAAGCAAGCTTTCTAGACCAT
BO28138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10899-RA | 840 | CG10899-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG10899-RC | 603 | CG10899-PC | 1..600 | 254..853 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10899-RA | 961 | CG10899-RA | 46..884 | 15..853 | 4195 | 100 | Plus |
| CG10899-RC | 972 | CG10899-RC | 46..895 | 15..853 | 4050 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24856954..24857311 | 515..158 | 1790 | 100 | Minus |
| 3R | 32079331 | 3R | 24856747..24856901 | 667..513 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 24857371..24857514 | 158..15 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 24856460..24856568 | 853..745 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 24856617..24856698 | 745..664 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:24:45 has no hits.
BO28138.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 13:16:40 Download gff for
BO28138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 54..880 | 23..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:25 Download gff for
BO28138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 54..880 | 23..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:38 Download gff for
BO28138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10899-RA | 54..880 | 23..849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:38 Download gff for
BO28138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24856464..24856567 | 746..849 | 100 | <- | Minus |
| 3R | 24856617..24856696 | 666..745 | 100 | <- | Minus |
| 3R | 24856749..24856899 | 515..665 | 100 | <- | Minus |
| 3R | 24856955..24857311 | 158..514 | 100 | <- | Minus |
| 3R | 24857372..24857506 | 23..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:25 Download gff for
BO28138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20682186..20682289 | 746..849 | 100 | <- | Minus |
| arm_3R | 20682339..20682418 | 666..745 | 100 | <- | Minus |
| arm_3R | 20682471..20682621 | 515..665 | 100 | <- | Minus |
| arm_3R | 20682677..20683033 | 158..514 | 100 | <- | Minus |
| arm_3R | 20683094..20683228 | 23..157 | 100 | | Minus |
BO28138.pep Sequence
Translation from 16 to 871
> BO28138.pep
MFLVARSFAPINSGTRSHFGFNYDKQGRDWNVKCGERQSPIALWSCNAIT
CNVPKLKFLNYHKSLCDPLSVINNGLTVLMRIPKTVDGSRPSLCISTEGQ
QVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKNASYKSNKEAGL
QPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMAL
QDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL
RDSRDQRVLNTYRELQDGHDRPVYRSKAKASFLDH
BO28138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10899-PA | 279 | CG10899-PA | 1..279 | 1..279 | 1512 | 100 | Plus |
| CG10899-PC | 200 | CG10899-PC | 1..200 | 80..279 | 1078 | 100 | Plus |
| CG18673-PC | 302 | CG18673-PC | 43..297 | 21..274 | 523 | 42.6 | Plus |
| CG3669-PB | 298 | CG3669-PB | 10..284 | 1..274 | 466 | 33.5 | Plus |
| CG18672-PC | 286 | CG18672-PC | 26..283 | 21..277 | 427 | 35.6 | Plus |
