BO28139.complete Sequence
931 bp assembled on 2011-06-17
GenBank Submission: KX796847
> BO28139.complete
GAAGTTATCAGTCGACATGCTCCAGAATTTCGCGTTTGAGAATCACCCCA
CAATCGGATTCTTTTCCAAGCAATCGGAGCTAATGAGAATGCTGCCCGAG
ATTCCCAAGCTGCGCAACATCTTCGATCTGTTCGTGGTCAATGAATGTGA
CCAGGCGGCTGGCGGAGAAGATGTGGCGGCCCCAACATGCTTGGATCTTG
GCATCGGGATACGGATGACGGATGTGGCGGACTGCCTGCGCATCATGGGC
CTGAATCCCAGTGACGACGAGCTGCAGCAGCGACTGGAGGAGCATGTGCG
TCGACGCGAGTCGTTGGGCATGGGAATGAAGAAGATCGCACAGCGCGCCA
CCTTTGAGCTGGTGCTCACGCTGTACTGCCAGCTGGCGGAGCAGGAGGTG
AAGGAGATGGCCAAGGGATGCATCGTCGAGAATGTGCTGCGCGTGTTGCG
TAGCCGCGATTCCGCGGGCACTGGCATGTTGCCCTACAGTCAGCTGCGCC
ATTTGCTGACCACCATGGGCAATCGATTGGACGAGACGGAGGTCTACGGC
GTGCTCCATCGCGCTGCGGACATTAATGGCAATGTCCTCTACGAGCACCT
AGTACACCAGCTGTTCGCCACGGATCCGCTGGCCGAGGAGCGGCTGCAAC
AGGCGCAGCTTTACCTGCAGGCCGTCGGACGCAATGCCATCGACATGGAC
ATGGATAAGCGGGACGAGTTCATCGATGCCATCCGGCGGGCGGATCCCGC
GCGCTCCGGTTTCATTGAGCCGCAGCGCCTGCTCGAGCTGCTCAATCGCA
ATGGGGAGCAGTTCACCGGCGAGGAGCTGCAGCTGCTCATCCAGGGAATG
GAGGATACACGGTGCAAGCGGGGCATCAACTATTGTCGCTTCCTGGAGTT
CATTATGAACGAGGCAAGCTTTCTAGACCAT
BO28139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34435-RA | 900 | CG34435-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34435-RA | 1084 | CG34435-RA | 73..969 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5613440..5614174 | 913..179 | 3675 | 100 | Minus |
| X | 23542271 | X | 5614233..5614395 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:27 has no hits.
BO28139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:54 Download gff for
BO28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34435-RA | 1..897 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:37 Download gff for
BO28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34435-RA | 73..969 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:53 Download gff for
BO28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34435-RA | 73..969 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:53 Download gff for
BO28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5613438..5614173 | 180..915 | 99 | <- | Minus |
| X | 5614233..5614395 | 17..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:37 Download gff for
BO28139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5507471..5508206 | 180..915 | 99 | <- | Minus |
| arm_X | 5508266..5508428 | 17..179 | 100 | | Minus |
BO28139.pep Sequence
Translation from 16 to 931
> BO28139.pep
MLQNFAFENHPTIGFFSKQSELMRMLPEIPKLRNIFDLFVVNECDQAAGG
EDVAAPTCLDLGIGIRMTDVADCLRIMGLNPSDDELQQRLEEHVRRRESL
GMGMKKIAQRATFELVLTLYCQLAEQEVKEMAKGCIVENVLRVLRSRDSA
GTGMLPYSQLRHLLTTMGNRLDETEVYGVLHRAADINGNVLYEHLVHQLF
ATDPLAEERLQQAQLYLQAVGRNAIDMDMDKRDEFIDAIRRADPARSGFI
EPQRLLELLNRNGEQFTGEELQLLIQGMEDTRCKRGINYCRFLEFIMNEA
SFLDH
BO28139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34435-PA | 299 | CG34435-PA | 1..299 | 1..299 | 1538 | 100 | Plus |
| Mlc-c-PA | 147 | CG3201-PA | 27..146 | 65..201 | 159 | 27.7 | Plus |
| Mlc-c-PB | 153 | CG3201-PB | 33..152 | 65..201 | 159 | 27.7 | Plus |
