BO28140.complete Sequence
1351 bp assembled on 2011-06-22
GenBank Submission: KX795924
> BO28140.complete
GAAGTTATCAGTCGACATGATGCTTCAGTTTATCGGCCTAATTTTGGCGG
TCGTGATTCTGCGAGAGATTCGGGCACGTGAGGCGATCGCAACCATTCCA
GATGTGGGTCAGATAATCAAAGATCTCGATGGACTGCACATCGATGGAGA
AATGTTTCATCAAGGTTCTCCCTGCAGAGTGGATGTGCAAAATGATCTGC
CCCGTTTGGATAAAGTGCAGCCGCTGTACCTGCGCCCAGGAACAGATCTC
TACTGGCTGCCCAATGCTTATGGGCACCTGGAGGTTCAACGCGGCGCCAG
CATCGAGCTGCACTGCAGCCATTCGTTCGCGCCCGCGAATGGAGAGTCTT
TGGATGCGAAGCTGCGTTCCATTCGGGTGAAGTGCGTGCAGGACACCACC
TTCGAGTGGATGGGGGCTAAAATCCATTTCAGCGACTTTGTCTGCAATCA
CTCCATGCCCTACACCGTGGAGCGATTGGACAGGAGTTGTGGCAGCGACA
CTCCGAGTCCATCCACCTCGTACTTGTATCGCGTGGGCTATGACACCGGA
GATGGCAGATTTGTGGCCACCATGGAGCTGTGCCACGACCCAAATCAACT
GCGCACCCACTACGCCCACCATCAACTGACACCGGCGAATGTGCACTTCC
AGAAAAAATTGAAACGCCCGAGGTTTAGCACCGCCGGCCATTTCACGGGC
TTTGACATGGCCAGAATTTATTCGCCCAAGAGCCAGGAGAAACTGATGGT
GCCCGGCCTCATTGACGTGAAGAGTGGTCTGTTCCTGGCCCGCGGACATT
TGACGGCCAAAGCGGATCTAATCTATGCTAGCCAACAGAAGAGCAGCTTC
AACTACATGAACGTGGCGCCGCAATGGCAGAGCTTCAATGGTGGTCAGTG
GTCCAAGCTGGAGGAATCCACCCGACAATATGTGGCCCGTTCGGGCATCA
CGGCCACTGTGTATACGGGCATCTATGGCGAAATGAAGGTGGCTGGCAGC
AAAGTCCTCCACATGACCACCAATGCCAATAACATAGGTGTGGTGGCCGT
GCCCCAGCTCTTCTATCGCGTCCTCATCGACGAGGGCCATCCGACCCGCG
GAATCGCTTTGGTGGGTGTGAATAACCCACATGCCACCCTGGCCCAGATC
CACGAGTCCTATATCATCTGCGATCCAGTGGAGGAGTCGGTGCAGTGGCT
TAGCTGGCTGCACAAAAGCAACGCCAAGGGTAACCTGAAGAATGGCTATC
TGTATGCCTGTTCGGTGGCGAATTTGGCCCGGGCTGTCGGACATTTGCCA
CGCCCACTTCTCGAAGTGGATGAGCTGCTCACTGCAAGCTTTCTAGACCA
T
BO28140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14118-RA | 1320 | CG14118-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14118-RA | 1637 | CG14118-RA | 56..1372 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12893323..12894493 | 163..1333 | 5855 | 100 | Plus |
| 3L | 28110227 | 3L | 12892713..12892862 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:57 has no hits.
BO28140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-22 09:58:01 Download gff for
BO28140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1372 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:53 Download gff for
BO28140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1372 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:46 Download gff for
BO28140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1372 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:46 Download gff for
BO28140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12892713..12892860 | 17..164 | 100 | -> | Plus |
| 3L | 12893325..12894493 | 165..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:53 Download gff for
BO28140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12885813..12885960 | 17..164 | 100 | -> | Plus |
| arm_3L | 12886425..12887593 | 165..1335 | 99 | | Plus |
BO28140.pep Sequence
Translation from 16 to 1351
> BO28140.pep
MMLQFIGLILAVVILREIRAREAIATIPDVGQIIKDLDGLHIDGEMFHQG
SPCRVDVQNDLPRLDKVQPLYLRPGTDLYWLPNAYGHLEVQRGASIELHC
SHSFAPANGESLDAKLRSIRVKCVQDTTFEWMGAKIHFSDFVCNHSMPYT
VERLDRSCGSDTPSPSTSYLYRVGYDTGDGRFVATMELCHDPNQLRTHYA
HHQLTPANVHFQKKLKRPRFSTAGHFTGFDMARIYSPKSQEKLMVPGLID
VKSGLFLARGHLTAKADLIYASQQKSSFNYMNVAPQWQSFNGGQWSKLEE
STRQYVARSGITATVYTGIYGEMKVAGSKVLHMTTNANNIGVVAVPQLFY
RVLIDEGHPTRGIALVGVNNPHATLAQIHESYIICDPVEESVQWLSWLHK
SNAKGNLKNGYLYACSVANLARAVGHLPRPLLEVDELLTASFLDH
BO28140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14118-PA | 439 | CG14118-PA | 1..439 | 1..439 | 2328 | 100 | Plus |
| CG14120-PA | 1371 | CG14120-PA | 953..1369 | 26..438 | 601 | 33 | Plus |
| CG6839-PA | 430 | CG6839-PA | 57..420 | 53..428 | 567 | 32.3 | Plus |
| CG3819-PB | 423 | CG3819-PB | 5..414 | 1..428 | 560 | 29.5 | Plus |
| CG3819-PA | 423 | CG3819-PA | 5..414 | 1..428 | 560 | 29.5 | Plus |
| CG14120-PA | 1371 | CG14120-PA | 601..984 | 51..445 | 519 | 31 | Plus |
| CG14120-PA | 1371 | CG14120-PA | 47..424 | 53..438 | 506 | 30.6 | Plus |
