Clone BO28142 Report

Search the DGRC for BO28142

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG14105-RA
Protein status:BO28142.pep: Imported from assembly
Sequenced Size:589

Clone Sequence Records

BO28142.complete Sequence

589 bp assembled on 2011-06-17

GenBank Submission: KX795682

> BO28142.complete
GAAGTTATCAGTCGACATGCCGCAGGCCAATCTTACGTTAAGTCCCCATG
ATCAGCAGGTGCTCGATTCCATTTTCAATCCCCTCGAGCTTAGCAGCCTA
CAGACAAATAACTTAATTCCCGCTGAATCCGACCTGAAGGATGAGGAGCC
GGATACCCAGGCTATCAAAGCTTCCAGGGAACTGGAGCTAAAAGCCATCG
CCTTATCCGAAAGCGGGGAGCTTGATGGAGCACTGGAACTATTTCAACAA
TCATTAAATCTAGCCCAGAGGGCTTCCGTGCTTAATAATCGGGCACAAAC
TTTACGCCTAGCCAAACGTGATGAGGAGGCCCTCGATGACCTAAACAAAG
CCCTAGAACTGGCCAATGATCAGCAGACCCGCACCAAGTGCCATGCCCAT
TGTCAGCGAGGTGTCCTTTATCGTAAACTGGATAACTTGGAGGCGGCTCG
TGCCGATTTCGAGGCAGCAGCCCAGTTGGGCAGTAAATTCGCCAGAGAAC
AGTTGGTGGAAATCAATCCCTATGCAGCTCTCTGCAATCAAATGCTCCGT
CAGGCATTCGATCAACTCAAGGCAAGCTTTCTAGACCAT

BO28142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-RA 558 CG14105-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-RA 666 CG14105-RA 37..592 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13426327..13426637 326..16 1555 100 Minus
3L 28110227 3L 13426089..13426265 502..326 885 100 Minus
3L 28110227 3L 13425965..13426036 571..500 360 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:55:37 has no hits.

BO28142.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:54 Download gff for BO28142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 38..592 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:41 Download gff for BO28142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 38..592 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:57 Download gff for BO28142.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 38..592 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:57 Download gff for BO28142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13425961..13426033 503..573 97 <- Minus
3L 13426089..13426264 327..502 100 <- Minus
3L 13426327..13426636 17..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:41 Download gff for BO28142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13419061..13419133 503..573 97 <- Minus
arm_3L 13419189..13419364 327..502 100 <- Minus
arm_3L 13419427..13419736 17..326 100   Minus

BO28142.pep Sequence

Translation from 16 to 589

> BO28142.pep
MPQANLTLSPHDQQVLDSIFNPLELSSLQTNNLIPAESDLKDEEPDTQAI
KASRELELKAIALSESGELDGALELFQQSLNLAQRASVLNNRAQTLRLAK
RDEEALDDLNKALELANDQQTRTKCHAHCQRGVLYRKLDNLEAARADFEA
AAQLGSKFAREQLVEINPYAALCNQMLRQAFDQLKASFLDH

BO28142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-PA 185 CG14105-PA 1..185 1..185 920 100 Plus