Clone BO28143 Report

Search the DGRC for BO28143

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG14551-RA
Protein status:BO28143.pep: Imported from assembly
Sequenced Size:637

Clone Sequence Records

BO28143.complete Sequence

637 bp assembled on 2011-06-17

GenBank Submission: KX794764

> BO28143.complete
GAAGTTATCAGTCGACATGATCTCACGACGCGACAAATTGCTGCAGCAGC
CGTGGGAGCAACTGCGGTACGCCCAGCACCGCGAGAAGGTCATGTCCGCC
CGCCCAGCCATTGACACCCACTCGCCGCGCGCCCACGAACACGTGCAGCG
CAAGTGGAAGAAGCAGCAAGTGGAGCGGGAGCGCCAGCAGCAGATCGAGC
GGGAGAACCTAAGACTCCTCCAGAAACTGGGCGACATCATGCGCACCAAG
CGCATCAACAATCTCTGGCTGGAGCCGCGGCCCAATTTTCTTAACCGCGA
GAAGCTTTTTGCCACCCGTCCGTACTCCAGCCTCCCGGAAGTGGTCACCA
TTTACGGAAAACAACCGCCGGGACCACTTATCTATGGCATGCTGCCCAAA
CCGGCGGTTGTGGGTCGGTGTCCCACCTGCAGCGGCAATCCGGAGCGCAC
CGAGGTGGCCATACCCGAGCAGCGAACTCCTTGGGCGCCCGAGAGAAAGT
CCTGGAACCGGAAGACCCAGGAGCAAGTAAAGCCGCATCGATGCTACCAC
TGCGGATCTGTAAAGACCAGCGAACGCAAGTACTTCGAGGAATTCTCCTA
CTCTTACTCCTACGACGAAGCAAGCTTTCTAGACCAT

BO28143.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14551-RB 606 CG14551-PB 1..603 17..619 3015 100 Plus
CG14551-RA 606 CG14551-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14551-RB 660 CG14551-RB 11..613 17..619 3015 100 Plus
CG14551-RA 1432 CG14551-RA 783..1385 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26061315..26061648 619..286 1670 100 Minus
3R 32079331 3R 26061961..26062229 285..17 1345 100 Minus
Blast to na_te.dros performed 2014-11-26 14:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 672..712 202..162 115 75.6 Minus

BO28143.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:55 Download gff for BO28143.complete
Subject Subject Range Query Range Percent Splice Strand
CG14551-RA 783..1385 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:43 Download gff for BO28143.complete
Subject Subject Range Query Range Percent Splice Strand
CG14551-RA 783..1385 17..621 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:58 Download gff for BO28143.complete
Subject Subject Range Query Range Percent Splice Strand
CG14551-RA 783..1385 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:58 Download gff for BO28143.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26061312..26061648 286..621 99 <- Minus
3R 26061961..26062229 17..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:43 Download gff for BO28143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21887034..21887370 286..621 99 <- Minus
arm_3R 21887683..21887951 17..285 100   Minus

BO28143.pep Sequence

Translation from 16 to 637

> BO28143.pep
MISRRDKLLQQPWEQLRYAQHREKVMSARPAIDTHSPRAHEHVQRKWKKQ
QVERERQQQIERENLRLLQKLGDIMRTKRINNLWLEPRPNFLNREKLFAT
RPYSSLPEVVTIYGKQPPGPLIYGMLPKPAVVGRCPTCSGNPERTEVAIP
EQRTPWAPERKSWNRKTQEQVKPHRCYHCGSVKTSERKYFEEFSYSYSYD
EASFLDH

BO28143.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14551-PB 201 CG14551-PB 1..201 1..201 1093 100 Plus
CG14551-PA 201 CG14551-PA 1..201 1..201 1093 100 Plus