BO28144.complete Sequence
925 bp assembled on 2011-06-17
> BO28144.complete
GAAGTTATCAGTCGACATGAGCCTGCTGCGCCTGCTTGGTGCCCTGCTGC
TAGCCACATTCAATGGAATGGCTCCTGTGCCCGCGGAGGGACTGCACCTG
TCCAACCTGTCCGTCCCGCGCATTATCGACGTTGCCCAAAAGGCGAAACT
CTTCTGCAGCTACGCGATGGGCAATCGGACGCTGAACTCAGTCAAATGGT
ACAAGGATGGCCTCGAGTTTTTCAGATACTCGCCTCTAACACCGCCAACA
ACAAATTGGTTCCCCGTTAAAGGTGTCACCATCGCCGACGGTTCGCCGCA
TTGCAATCAATTCATCTGCAACGTGGAGCTGGAGAAGCTCACTGCCCACT
CCTCCGGACAGTACAGGTGCGAGGTGTCCGGCGATGCGCCAGAGTTCAAG
CTGATCGATCAGACGGCCAATATGACAGTCGGAGTGTTGCCCAAATTCGA
TCCGTTCATTTCGGGCGTGCGACACGCATACAAATATCACGACTATCTCG
AGGCAAATTGCAGTACGGAGATGTCAAGTCCGATGGCCAAATTAACATGG
TATATTAACAATAAGACGGCACCTGGGCACAGTTTGCAGCCGCAAATCAA
CGAAGTCTCACGCAACGTGGACGGCTTTCACCTGTTCGCCAGCCACCTGC
ACTTGCGACTCCACCTGGACGACCAGCGGTTCATCAGCAAGAGCGAAATG
TTGGAGCTCCGCTGCACGGCGGACATCATGGGACTGGCAGCCGTTAGGCG
GGAGAGCAGGGTACGGACCACCATCCTGGCGCTCAGGGATGCCGGCACCA
AGCAGCGACTCACCGAGAACGGATCCTGCATGACCGGCCAACCAGCCTCC
CTGGCCGCCTGGCTCCTGAGCCTTGTCCACATCCTACGCTGGCACAGCAC
CCAGAGTGCAAGCTTTCTAGACCAT
BO28144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Vc-RA | 843 | CG14390-PA | 1..840 | 68..907 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Vc-RA | 2229 | CG14390-RA | 757..1647 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12746837..12747114 | 845..568 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 12752418..12752632 | 434..220 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 12754631..12754791 | 225..65 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 12747429..12747565 | 569..433 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 12746618..12746683 | 907..842 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 12777746..12777795 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:52 has no hits.
BO28144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:56 Download gff for
BO28144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vc-RA | 358..1248 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:46 Download gff for
BO28144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vc-RA | 757..1647 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:02 Download gff for
BO28144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Vc-RA | 757..1647 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:02 Download gff for
BO28144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12746616..12746679 | 846..909 | 96 | <- | Minus |
| 3R | 12746837..12747113 | 569..845 | 100 | <- | Minus |
| 3R | 12747430..12747563 | 435..568 | 100 | <- | Minus |
| 3R | 12752418..12752626 | 226..434 | 100 | <- | Minus |
| 3R | 12754631..12754790 | 66..225 | 100 | <- | Minus |
| 3R | 12777747..12777795 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:46 Download gff for
BO28144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8572338..8572401 | 846..909 | 96 | <- | Minus |
| arm_3R | 8572559..8572835 | 569..845 | 100 | <- | Minus |
| arm_3R | 8573152..8573285 | 435..568 | 100 | <- | Minus |
| arm_3R | 8578140..8578348 | 226..434 | 100 | <- | Minus |
| arm_3R | 8580353..8580512 | 66..225 | 100 | <- | Minus |
| arm_3R | 8603469..8603517 | 17..65 | 100 | | Minus |
BO28144.pep Sequence
Translation from 16 to 925
> BO28144.pep
MSLLRLLGALLLATFNGMAPVPAEGLHLSNLSVPRIIDVAQKAKLFCSYA
MGNRTLNSVKWYKDGLEFFRYSPLTPPTTNWFPVKGVTIADGSPHCNQFI
CNVELEKLTAHSSGQYRCEVSGDAPEFKLIDQTANMTVGVLPKFDPFISG
VRHAYKYHDYLEANCSTEMSSPMAKLTWYINNKTAPGHSLQPQINEVSRN
VDGFHLFASHLHLRLHLDDQRFISKSEMLELRCTADIMGLAAVRRESRVR
TTILALRDAGTKQRLTENGSCMTGQPASLAAWLLSLVHILRWHSTQSASF
LDH
BO28144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Vc-PA | 280 | CG14390-PA | 1..280 | 18..297 | 1487 | 100 | Plus |
| beat-Va-PC | 300 | CG10134-PC | 20..297 | 23..291 | 474 | 38.2 | Plus |
| beat-Va-PA | 300 | CG10134-PA | 20..297 | 23..291 | 474 | 38.2 | Plus |
| beat-Va-PB | 300 | CG10134-PB | 20..297 | 23..291 | 474 | 38.2 | Plus |
| beat-Vb-PB | 328 | CG31298-PB | 24..258 | 26..246 | 467 | 42.3 | Plus |
