BO28145.complete Sequence
625 bp assembled on 2011-06-17
GenBank Submission: KX797797
> BO28145.complete
GAAGTTATCAGTCGACATGATTCGAGGCCTGGTGATTCTTGTTTTGGCCC
TGGCCAACACTTGGGCAACGGACTACAACGCTCTGATTGACGATGAGGGC
ATCTACGTGAAGTGCTCAGAAGCCCCAGCCGGTACCCTTGGTCCCCGCGA
TGTATTTAACATTGACAATATGGTGATGCATATGGAACCAGAAGGCATTT
ACGTATCGGGGAATATGACCGTTAAACTCAACTTTCTACCCTCCGATCGC
ATTTCCGCTAGGTTCAGCGTGATGCACTATGAACGTGGTAGTTGGCAACC
CACAATGTTCAACCTTCACTCCCCGAACTTTTGTGAGGTGATGTTTGACG
AAGATCAATACTGGTTCAAGTATTGGTTCAGATATATACGAAACAAAGAG
GAGATTCGAGAAAAATGCTTGAAAGTGAAAGATACCGTGCTAGTGTATGA
TGAGTTCTTGATGGTCCTGCACCTAGAAAATGTCAATACCTCAAACTTAC
AGGGGCGCTACAAGGCGGTGATTACTCTGGAGGCTTTCGATGAACATAAT
GTGCGACGACCATCATCCCTCTGCGTTGAAATAAGAGGCGACCTTGAGAG
GGTTACCGCAAGCTTTCTAGACCAT
BO28145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB38b-RA | 594 | CG33321-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB38b-RA | 695 | CG33321-RA | 9..599 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20817022..20817262 | 257..17 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 20816785..20816961 | 433..257 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 20816552..20816725 | 607..434 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:56:15 has no hits.
BO28145.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:56 Download gff for
BO28145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 9..599 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:56 Download gff for
BO28145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 9..599 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:09 Download gff for
BO28145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB38b-RA | 9..599 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:09 Download gff for
BO28145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20816550..20816725 | 434..609 | 98 | <- | Minus |
| 2L | 20816785..20816961 | 257..433 | 100 | <- | Minus |
| 2L | 20817023..20817262 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:56 Download gff for
BO28145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20816550..20816725 | 434..609 | 98 | <- | Minus |
| arm_2L | 20816785..20816961 | 257..433 | 100 | <- | Minus |
| arm_2L | 20817023..20817262 | 17..256 | 100 | | Minus |
BO28145.pep Sequence
Translation from 16 to 625
> BO28145.pep
MIRGLVILVLALANTWATDYNALIDDEGIYVKCSEAPAGTLGPRDVFNID
NMVMHMEPEGIYVSGNMTVKLNFLPSDRISARFSVMHYERGSWQPTMFNL
HSPNFCEVMFDEDQYWFKYWFRYIRNKEEIREKCLKVKDTVLVYDEFLMV
LHLENVNTSNLQGRYKAVITLEAFDEHNVRRPSSLCVEIRGDLERVTASF
LDH
BO28145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB38b-PA | 197 | CG33321-PA | 1..197 | 1..197 | 1050 | 100 | Plus |
| CheB38c-PA | 198 | CG14405-PA | 1..196 | 1..196 | 523 | 46.9 | Plus |
| CheB42c-PB | 196 | CG33350-PB | 1..195 | 2..196 | 510 | 44.6 | Plus |
| CheB42b-PA | 196 | CG33351-PA | 4..191 | 5..192 | 485 | 42 | Plus |
| CheB38a-PA | 197 | CG33320-PA | 1..196 | 1..196 | 476 | 42.3 | Plus |
