BO28151.complete Sequence
914 bp assembled on 2011-06-17
GenBank Submission: KX794762
> BO28151.complete
CGAAAGGCCAGAAGAGAACGCGCCCCTTTTTAACTTCCTATAGCATACAT
TATACGAAGTTATCAGTCGACATGAAACGTCTTCTATTTCTCTTTCTGCT
TGCTGGTATTTTAATAAACAATCATGCCCTGCAGCACAACGAGACCATTG
ACTTGAAAAAGTTGGCCAAAATAGTGCTGCCTCCGGCTTATCAAACCCGT
GTTATTGGTGGTCGGGTGACCACCAACGCGAAATTGGGCGGATACCTGGT
GGCAATGCGGTACTTCAATAATTTCATCTGCGGCGGTACTTTAATCCATG
AGCTCATTGTCCTCACGGCGGCGCACTGTTTTGAGGACCGAGCAGAAAAG
GAAGCCTGGAGCGTGGATGGTGGCATCTCCAGACTCAGCGAAAAAGGCAT
TCGTCGTCAAGTTAAGCGCTTCATTAAGTCGGCCCAGTTTAAAATGGTCA
CCATGAACATGGACGTGGCTGTGGTGCTACTGAATCGACCGATGGTTGGA
AAAAACATCGGAACTCTATCCTTGTGCAGTACGGCCTTGACTCCGGGACA
GACAATGGACGTATCCGGCTGGGGAATGACAAATCCGGATGACGAGGGTC
CGGGGCATATGCTCCGCACGGTATCAGTACCTGTGATTGAAAAAAGAATA
TGCCGCGAAGCCTATCGGGAATCAGTCTCCATATCGGATAGCATGTTTTG
TGCCTCAGTTTTGGGAAAAAAGGATGCTTGCACCTACGACTCAGGAGGTC
CCTTGGTTTACGAAAAACAAGTCTGCGGCATTGTGTCCTTTGGGATCGGA
TGTGCGAGCAGGCGTTATCCCGGTGTCTATACGGATGTTCATTACGTAAA
GCCATTTATTGTAAAAGGCATCAAAGCTTTGCTCTCCCGTTCCAGGGCAA
GCTTTCTAGACCAT
BO28151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-RA | 828 | CG10586-PA | 1..825 | 72..896 | 4125 | 100 | Plus |
| CG11037-RA | 879 | CG11037-PA | 703..866 | 720..883 | 340 | 80.5 | Plus |
| CG10587-RC | 870 | CG10587-PC | 667..809 | 693..835 | 280 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-RA | 883 | CG10586-RA | 17..846 | 67..896 | 4135 | 99.9 | Plus |
| CG11037-RA | 913 | CG11037-RA | 705..868 | 720..883 | 340 | 80.5 | Plus |
| CG10588-RB | 3727 | CG10588-RB | 3510..3673 | 883..720 | 340 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20956126..20956734 | 675..67 | 3030 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20955792..20956015 | 896..673 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 20960443..20960606 | 883..720 | 340 | 80.5 | Minus |
| 3L | 28110227 | 3L | 20961623..20961765 | 835..693 | 280 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-26 14:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 1844..1873 | 107..78 | 114 | 86.7 | Minus |
| G4 | 3856 | G4 G4_DM 3856bp | 2264..2311 | 116..69 | 113 | 75.5 | Minus |
BO28151.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:59 Download gff for
BO28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10586-RA | 17..846 | 67..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:12 Download gff for
BO28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 17..846 | 67..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:34 Download gff for
BO28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 17..846 | 67..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:34 Download gff for
BO28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20955790..20956012 | 676..898 | 99 | <- | Minus |
| 3L | 20956126..20956734 | 67..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:12 Download gff for
BO28151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20948890..20949112 | 676..898 | 99 | <- | Minus |
| arm_3L | 20949226..20949834 | 67..675 | 99 | | Minus |
BO28151.pep Sequence
Translation from 71 to 914
> BO28151.pep
MKRLLFLFLLAGILINNHALQHNETIDLKKLAKIVLPPAYQTRVIGGRVT
TNAKLGGYLVAMRYFNNFICGGTLIHELIVLTAAHCFEDRAEKEAWSVDG
GISRLSEKGIRRQVKRFIKSAQFKMVTMNMDVAVVLLNRPMVGKNIGTLS
LCSTALTPGQTMDVSGWGMTNPDDEGPGHMLRTVSVPVIEKRICREAYRE
SVSISDSMFCASVLGKKDACTYDSGGPLVYEKQVCGIVSFGIGCASRRYP
GVYTDVHYVKPFIVKGIKALLSRSRASFLDH
BO28151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-PA | 275 | CG10586-PA | 1..275 | 1..275 | 1425 | 100 | Plus |
| CG11037-PA | 292 | CG11037-PA | 41..291 | 23..273 | 871 | 66.5 | Plus |
| CG10587-PA | 276 | CG10587-PA | 1..275 | 1..273 | 855 | 59.6 | Plus |
| CG10587-PC | 289 | CG10587-PC | 1..288 | 1..273 | 831 | 56.9 | Plus |
| CG10587-PD | 225 | CG10587-PD | 1..200 | 1..198 | 554 | 54.5 | Plus |
