BO28154.complete Sequence
2224 bp assembled on 2011-07-18
GenBank Submission: KX799051
> BO28154.complete
GAAGTTATCAGTCGACATGGCCGGGAGAAGGGTGATTGGTCTCTGTTTTG
GAATATTCTTACAAGTGCTGCTAGCGACTGCTGGACAGGATCGGATGAGC
ATGCTCTGTTCCGACGACGACACACCAGCCTGTGCCCAGAGCCGCGAAAA
TGGAATGTACTTTTTGTTCGCCAACGAGTGTGACCTTCGGAAGGCCCAGC
GTGGCAACCTCATGAATGGCCCTCTATATGACGTTACGCTTCGATTCTGC
TTTCCCAGCTGCGAATTCGAGTGCAGCTCAAGATATCAGCCAGTTTGTGG
CATCAGCTCGAAGTCGGGGGAACGAAAGACCTTCAGGAGTCGCTGCGAAA
TGCTGCGAACCGCTTGCATCTCAAGGTCGGAGTGGATGGTCCATCGATGG
GGAGTGTGTCCAAAAGCCAACGCGGTGCCACAGATCAGTGAAAAGCCGCC
TGTGCCCGTGCCCTGCACCAGGATCTATCGACCTGTTTGCGCCATGTACG
CTGGTGTCAAGTCAACCTTCTCCAACGAGTGTTTGGTGAACGCGGAAAAC
ATCAAGTCCCAGAGAAACTGGCGCATCGTTTCCGAGGGCCTTTGTGGCGA
GGACAGCACCAAGATGAAGCATAGTCGCAAGCAGAAGCCGAAGGCCAAGC
CCAAGTCGGATGCGGAGCGCACCAAGCGGAGCCACAGAGGCAAGAGGCTG
TCCACTCAGGCGGAAGACTTCCAGATACCGGAGGACGCCGTGGAGATTTA
CGCTCCCTCGACCTTTCACACGCAGTTCATCAGCCAATCGGGCGCCATGG
AGAAGAGCTACTCTCTGCCCGCCAGGAAGCCCTATGTGGTGGTCCCGCCT
AAATCGAAGCGGCGAATCCCCACAAAGTCTTGTGTTTTCGGCAATGAGCC
TGTTTGCGGGAACTTAAGAGGGCAGAGTCGCACCTTTTCCAACGTTTGTG
AACTCATGGAGTTTAGCCAAAAAGTCGGAAATGCATGGACCATTGCTCAC
AATGGAGCCTGTCGCCGCTGCGATAAGACTTGTCCTACGGTTTATCAACC
TATTTGTGCCACCAGAAACGGCATCAATCACACAATCGTCAACGAGTGCT
ATTTGGAGCGAGTGCGCTGCAAGGATCCAAAAAGCATATGGAAGCTATCC
CACAAAGGTGAGTGCGCCAAGTCAGTGAGCAACCCACGGCACATTTACTC
CACTGGTAAAAGTCGCCCAACGTCTTTGGTGCCAAGTGTTTTATACGGAA
AGAGCACCACCACACCACGAAGTCGCTTCAGGAAACCAGTACGTAGGTTC
ACAACCACAAGGACTCCAACCACACCATACAAGCCACGTCAGCTGGCGAT
GACAAATTTCTCGGCCACTTCGCCTTCCCTGGAAACCAATAATCGCAAAA
TACGCAAAATTGAGCTCGCTGCTGCGGGATTTTCGGGCTTGGGTGCGTCA
AGCGGGTCAAATTTTCTGAGCTCTGAGGAAGATGCTTTCTGGTCCTCTGA
TGACAGTTGGCTGGTGCAGAAAACTCTCGATAATGTCAAGGGCTTGCTTG
GCAATAAGCCTACTTCCTTGAAGAAGGAGCACGGTGAGAAGTACCCACTG
TCCTATTGGATTGTCCCACCAAGGCAAACAAGTACTATCAGCACCACCAC
AGCTGCACCACCAGCTAAACTACCAGCTATTCTCAGCATGGCATCCACGG
AGCTATTAAATTTGGATTTTGGAAACCCTTCCAGCGCTTACGAAGAAGCT
GATCACGAAGCGATGCTCATGCTGACCACTAAAGAGGGCACCACCTCAAC
CACACCTGTGCCCAGCACCACTACACCGCCCAACATCACCGAACCTTCTA
CTACTGAATTGCCCACCAGTGTTGACGTTGCCTCTGACTCGGCGGAAACG
GTCAGTGAAGACTCCACGACGGATTTCGGAGAAACGACTGATCCAACGAC
CAGCAACGATTCCAGCACCTCAGATGCACCACAATCTTCGACCACAGAGG
CCGAGGAGTTGAACAGCCAAACCACCGGGAGCGAGTCCACCACCACCGTG
GCCTCCGACAAGCTGTCTACGACCACTTTAAATGCCGACTACGCGGTGGA
TGAGTCATTTTCCGAGTCCAGTGGTCAGACCTCCATCTATGGGCTCGACA
AGAACTCCTTGATCATGAGGTTGCTACGTGCCAGAAGTAACCAAAACGTG
CTCATCGCAAGCTTTCTAGACCAT
BO28154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1077-RA | 2193 | CG1077-PA | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1077-RA | 2302 | CG1077-RA | 34..2225 | 15..2206 | 10960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6169163..6170232 | 1137..2206 | 5350 | 100 | Plus |
| 3R | 32079331 | 3R | 6168368..6168784 | 567..983 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 6167884..6168222 | 228..566 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 6167516..6167732 | 15..231 | 1070 | 99.5 | Plus |
| 3R | 32079331 | 3R | 6168955..6169108 | 983..1136 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:38:30 has no hits.
BO28154.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:45 Download gff for
BO28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 1..2190 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:17 Download gff for
BO28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 36..2225 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:29 Download gff for
BO28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1077-RA | 36..2225 | 17..2208 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:29 Download gff for
BO28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6168956..6169108 | 984..1136 | 100 | -> | Plus |
| 3R | 6167518..6167728 | 17..227 | 100 | -> | Plus |
| 3R | 6167884..6168222 | 228..566 | 100 | -> | Plus |
| 3R | 6168368..6168784 | 567..983 | 100 | -> | Plus |
| 3R | 6169163..6170232 | 1137..2208 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:17 Download gff for
BO28154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1993240..1993450 | 17..227 | 100 | -> | Plus |
| arm_3R | 1993606..1993944 | 228..566 | 100 | -> | Plus |
| arm_3R | 1994090..1994506 | 567..983 | 100 | -> | Plus |
| arm_3R | 1994678..1994830 | 984..1136 | 100 | -> | Plus |
| arm_3R | 1994885..1995954 | 1137..2208 | 99 | | Plus |
BO28154.pep Sequence
Translation from 16 to 2224
> BO28154.pep
MAGRRVIGLCFGIFLQVLLATAGQDRMSMLCSDDDTPACAQSRENGMYFL
FANECDLRKAQRGNLMNGPLYDVTLRFCFPSCEFECSSRYQPVCGISSKS
GERKTFRSRCEMLRTACISRSEWMVHRWGVCPKANAVPQISEKPPVPVPC
TRIYRPVCAMYAGVKSTFSNECLVNAENIKSQRNWRIVSEGLCGEDSTKM
KHSRKQKPKAKPKSDAERTKRSHRGKRLSTQAEDFQIPEDAVEIYAPSTF
HTQFISQSGAMEKSYSLPARKPYVVVPPKSKRRIPTKSCVFGNEPVCGNL
RGQSRTFSNVCELMEFSQKVGNAWTIAHNGACRRCDKTCPTVYQPICATR
NGINHTIVNECYLERVRCKDPKSIWKLSHKGECAKSVSNPRHIYSTGKSR
PTSLVPSVLYGKSTTTPRSRFRKPVRRFTTTRTPTTPYKPRQLAMTNFSA
TSPSLETNNRKIRKIELAAAGFSGLGASSGSNFLSSEEDAFWSSDDSWLV
QKTLDNVKGLLGNKPTSLKKEHGEKYPLSYWIVPPRQTSTISTTTAAPPA
KLPAILSMASTELLNLDFGNPSSAYEEADHEAMLMLTTKEGTTSTTPVPS
TTTPPNITEPSTTELPTSVDVASDSAETVSEDSTTDFGETTDPTTSNDSS
TSDAPQSSTTEAEELNSQTTGSESTTTVASDKLSTTTLNADYAVDESFSE
SSGQTSIYGLDKNSLIMRLLRARSNQNVLIASFLDH
BO28154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1077-PA | 730 | CG1077-PA | 1..730 | 1..730 | 3836 | 100 | Plus |
| Mur11Da-PD | 626 | CG32644-PD | 192..462 | 410..706 | 179 | 25.5 | Plus |
| CG46026-PA | 666 | CG46026-PA | 349..650 | 386..707 | 162 | 24.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 545..847 | 395..705 | 160 | 23.7 | Plus |
