BO28162.complete Sequence
778 bp assembled on 2011-06-17
GenBank Submission: KX794583
> BO28162.complete
GAAGTTATCAGTCGACATGAAGCTCAACGTTTCCTATCCCGCGACGGGAT
GCCAAAAGCTATTCGAAGTGGTCGACGAGCACAAGCTGCGCGTCTTCTAC
GAGAAGCGTATGGGACAGGTTGTGGAGGCCGATATCCTCGGTGACGAGTG
GAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAGGGATTCC
CCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCTCCTGAAG
AAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTAAGCGCAA
GTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTGGCTCTGG
TCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGACACCACC
ATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCAAGCTCTA
CAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGTCGCCCTT
TGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAAAATTCAG
CGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCATTGCGCT
GAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGACTACGCCA
AGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGAGGAGGCC
AAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTGTCTCCAG
CGACAAGAAGGCAAGCTTTCTAGACCAT
BO28162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RB | 747 | CG10944-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
RpS6-RA | 654 | CG10944-PA | 1..651 | 110..760 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-RB | 960 | CG10944-RB | 84..827 | 17..760 | 3720 | 100 | Plus |
RpS6-RA | 1195 | CG10944-RA | 323..1062 | 21..760 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7899757..7900290 | 760..227 | 2670 | 100 | Minus |
X | 23542271 | X | 7900802..7901009 | 228..21 | 1040 | 100 | Minus |
X | 23542271 | X | 7897401..7897490 | 692..603 | 270 | 86.7 | Minus |
X | 23542271 | X | 7898591..7898680 | 692..603 | 270 | 86.7 | Minus |
X | 23542271 | X | 7897603..7897725 | 364..242 | 195 | 77.2 | Minus |
X | 23542271 | X | 7898793..7898915 | 364..242 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:00:11 has no hits.
BO28162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:02 Download gff for
BO28162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 82..825 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:40 Download gff for
BO28162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 84..827 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:26 Download gff for
BO28162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS6-RB | 84..827 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:26 Download gff for
BO28162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7899755..7900289 | 228..762 | 99 | <- | Minus |
X | 7900803..7901012 | 17..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:40 Download gff for
BO28162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7793788..7794322 | 228..762 | 99 | <- | Minus |
arm_X | 7794836..7795045 | 17..227 | 98 | | Minus |
BO28162.pep Sequence
Translation from 16 to 778
> BO28162.pep
MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQL
RIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGC
IVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKE
DDVRRFVVRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQ
IASKEASADYAKLLVQRKKESKAKREEAKRRRSASIRESKSSVSSDKKAS
FLDH
BO28162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS6-PB | 248 | CG10944-PB | 1..248 | 1..248 | 1251 | 100 | Plus |
RpS6-PA | 217 | CG10944-PA | 1..217 | 32..248 | 1087 | 100 | Plus |