Clone BO28162 Report

Search the DGRC for BO28162

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptRpS6-RB
Protein status:BO28162.pep: Imported from assembly
Sequenced Size:778

Clone Sequence Records

BO28162.complete Sequence

778 bp assembled on 2011-06-17

GenBank Submission: KX794583

> BO28162.complete
GAAGTTATCAGTCGACATGAAGCTCAACGTTTCCTATCCCGCGACGGGAT
GCCAAAAGCTATTCGAAGTGGTCGACGAGCACAAGCTGCGCGTCTTCTAC
GAGAAGCGTATGGGACAGGTTGTGGAGGCCGATATCCTCGGTGACGAGTG
GAAGGGCTACCAGCTGCGCATCGCCGGCGGCAACGACAAGCAGGGATTCC
CCATGAAGCAGGGTGTCTTGACCCACGGCCGTGTGCGTCTGCTCCTGAAG
AAGGGACACTCCTGCTACCGTCCACGCCGCACTGGCGAGCGTAAGCGCAA
GTCTGTGCGTGGATGCATCGTGGACGCCAACATGTCTGTGCTGGCTCTGG
TCGTCTTGAAGAAGGGTGAGAAGGACATTCCCGGTCTCACCGACACCACC
ATCCCACGTCGCCTGGGACCCAAGCGTGCTAGCAAGATCCGCAAGCTCTA
CAACTTGAGCAAGGAAGATGATGTGCGTCGCTTCGTTGTGCGTCGCCCTT
TGCCCGCCAAGGACAACAAGAAGGCCACCTCCAAGGCCCCCAAAATTCAG
CGCCTGATCACCCCCGTTGTGCTGCAGCGCAAGCACCGTCGCATTGCGCT
GAAGAAGAAGCGCCAGATCGCTTCCAAGGAGGCTTCCGCCGACTACGCCA
AGCTGTTGGTGCAGCGCAAGAAGGAGTCCAAGGCCAAGCGCGAGGAGGCC
AAGCGCCGCCGTTCTGCCTCCATTCGCGAGTCCAAGAGCTCTGTCTCCAG
CGACAAGAAGGCAAGCTTTCTAGACCAT

BO28162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RB 747 CG10944-PB 1..744 17..760 3720 100 Plus
RpS6-RA 654 CG10944-PA 1..651 110..760 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RB 960 CG10944-RB 84..827 17..760 3720 100 Plus
RpS6-RA 1195 CG10944-RA 323..1062 21..760 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899757..7900290 760..227 2670 100 Minus
X 23542271 X 7900802..7901009 228..21 1040 100 Minus
X 23542271 X 7897401..7897490 692..603 270 86.7 Minus
X 23542271 X 7898591..7898680 692..603 270 86.7 Minus
X 23542271 X 7897603..7897725 364..242 195 77.2 Minus
X 23542271 X 7898793..7898915 364..242 195 77.2 Minus
Blast to na_te.dros performed on 2014-11-26 15:00:11 has no hits.

BO28162.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:02 Download gff for BO28162.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 82..825 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:40 Download gff for BO28162.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 84..827 17..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:26 Download gff for BO28162.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 84..827 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:26 Download gff for BO28162.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899755..7900289 228..762 99 <- Minus
X 7900803..7901012 17..227 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:40 Download gff for BO28162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793788..7794322 228..762 99 <- Minus
arm_X 7794836..7795045 17..227 98   Minus

BO28162.pep Sequence

Translation from 16 to 778

> BO28162.pep
MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQL
RIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGC
IVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKE
DDVRRFVVRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQ
IASKEASADYAKLLVQRKKESKAKREEAKRRRSASIRESKSSVSSDKKAS
FLDH

BO28162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PB 248 CG10944-PB 1..248 1..248 1251 100 Plus
RpS6-PA 217 CG10944-PA 1..217 32..248 1087 100 Plus