Clone BO28163 Report

Search the DGRC for BO28163

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG31086-RA
Protein status:BO28163.pep: Imported from assembly
Sequenced Size:478

Clone Sequence Records

BO28163.complete Sequence

478 bp assembled on 2011-06-17

GenBank Submission: KX797112

> BO28163.complete
GAAGTTATCAGTCGACATGGACGGTCACAGCTGGCTTCACTTCAGCAACG
GAGCAATCCCCCAGGCAGCCGTTGTGGCTGGTCACGATTCCGATGGCGAC
ACCATCTTCATTGGCCGCGCCTTCTACTGCAACGACATGCTGCCGGCCAA
GATTATCCCCAACAAGGGCAAGGCCTACGTGGCGTATGCCAACCAGGAGG
TGGAGCTGGAGAACTACGAGGTACTCAGCGGCTTCAACTACGAGTGGCTG
CCGGCCGAGAACGGAGAGGTGCCTCCCGGCGCCGTCAAGGTCGGCCAGAA
TGTCGACGGAGAGACCTTGTACGCCGGAAGGGGCTACCATGCCGGCAGTT
TGACCGTGGGCAAGGTGCATCCGTCCCACGGCTGCCTGTACATTCCCTAC
GATTCCGAGGAGGTTAAGATATTCGCCTACGAGGTTCTGTCCCGTCGCTT
GGAGGCGAGAGCAAGCTTTCTAGACCAT

BO28163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31086-RB 447 CG31086-PB 1..444 17..460 2220 100 Plus
CG31086-RA 447 CG31086-PA 1..444 17..460 2220 100 Plus
CG32633-RB 858 CG32633-PB 52..424 68..440 1055 85.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31086-RB 906 CG31086-RB 401..853 8..460 2235 99.6 Plus
CG31086-RA 527 CG31086-RA 22..474 8..460 2235 99.6 Plus
CG31323-RA 3489 CG31323-RA 1919..2356 23..460 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26185737..26186174 23..460 2190 100 Plus
X 23542271 X 13562010..13562382 68..440 1055 85.5 Plus
Blast to na_te.dros performed on 2014-11-26 15:04:42 has no hits.

BO28163.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:12 Download gff for BO28163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31086-RA 23..466 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:51 Download gff for BO28163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31086-RA 31..474 17..462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:05 Download gff for BO28163.complete
Subject Subject Range Query Range Percent Splice Strand
CG31086-RA 31..474 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:05 Download gff for BO28163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26185732..26186174 17..462 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:51 Download gff for BO28163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22011454..22011896 17..462 98   Plus

BO28163.pep Sequence

Translation from 16 to 478

> BO28163.pep
MDGHSWLHFSNGAIPQAAVVAGHDSDGDTIFIGRAFYCNDMLPAKIIPNK
GKAYVAYANQEVELENYEVLSGFNYEWLPAENGEVPPGAVKVGQNVDGET
LYAGRGYHAGSLTVGKVHPSHGCLYIPYDSEEVKIFAYEVLSRRLEARAS
FLDH

BO28163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31086-PB 148 CG31086-PB 1..148 1..148 797 100 Plus
CG31086-PA 148 CG31086-PA 1..148 1..148 797 100 Plus
CG32633-PB 285 CG32633-PB 1..141 1..141 664 84.4 Plus
CG32633-PA 285 CG32633-PA 1..141 1..141 664 84.4 Plus
CG32633-PB 285 CG32633-PB 147..284 6..143 430 55.8 Plus
CG32633-PA 285 CG32633-PA 147..284 6..143 430 55.8 Plus
CG13321-PB 286 CG13321-PB 1..142 1..141 417 52.1 Plus
CG32633-PB 285 CG32633-PB 215..282 3..70 153 39.7 Plus
CG32633-PA 285 CG32633-PA 215..282 3..70 153 39.7 Plus
CG32633-PB 285 CG32633-PB 3..71 74..142 151 40.6 Plus
CG32633-PA 285 CG32633-PA 3..71 74..142 151 40.6 Plus