BO28164.complete Sequence
556 bp assembled on 2011-06-17
GenBank Submission: KX796587
> BO28164.complete
GAAGTTATCAGTCGAAATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTTCTGC
AATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGGCAAGCTTTCTA
GACCAT
BO28164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RA | 525 | CG3948-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
zetaCOP-RC | 492 | CG3948-PC | 1..489 | 50..538 | 2445 | 100 | Plus |
zetaCOP-RB | 510 | CG3948-PB | 1..479 | 17..495 | 2395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RA | 694 | CG3948-RA | 39..560 | 17..538 | 2610 | 100 | Plus |
zetaCOP-RC | 671 | CG3948-RC | 34..537 | 35..538 | 2520 | 100 | Plus |
zetaCOP-RB | 1030 | CG3948-RB | 39..517 | 17..495 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16672452..16672545 | 495..402 | 470 | 100 | Minus |
3L | 28110227 | 3L | 16671798..16671844 | 538..492 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:02 has no hits.
BO28164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:12 Download gff for
BO28164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RA | 39..560 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:56 Download gff for
BO28164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RA | 39..560 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:12 Download gff for
BO28164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RA | 39..560 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:12 Download gff for
BO28164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16671795..16671842 | 494..540 | 95 | <- | Minus |
3L | 16672454..16672544 | 403..493 | 100 | <- | Minus |
3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
3L | 16673482..16673499 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:56 Download gff for
BO28164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665554..16665644 | 403..493 | 100 | <- | Minus |
arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
arm_3L | 16666582..16666599 | 17..34 | 100 | | Minus |
arm_3L | 16664895..16664942 | 494..540 | 95 | <- | Minus |
BO28164.pep Sequence
Translation from 16 to 556
> BO28164.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVLQSAREQLKWSILKASFLDH
BO28164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-PA | 174 | CG3948-PA | 1..174 | 1..174 | 882 | 100 | Plus |
zetaCOP-PC | 163 | CG3948-PC | 1..163 | 12..174 | 824 | 100 | Plus |
zetaCOP-PB | 169 | CG3948-PB | 1..160 | 1..160 | 813 | 100 | Plus |