Clone BO28164 Report

Search the DGRC for BO28164

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptzetaCOP-RA
Protein status:BO28164.pep: Imported from assembly
Sequenced Size:556

Clone Sequence Records

BO28164.complete Sequence

556 bp assembled on 2011-06-17

GenBank Submission: KX796587

> BO28164.complete
GAAGTTATCAGTCGAAATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTTCTGC
AATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGGCAAGCTTTCTA
GACCAT

BO28164.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RA 525 CG3948-PA 1..522 17..538 2610 100 Plus
zetaCOP-RC 492 CG3948-PC 1..489 50..538 2445 100 Plus
zetaCOP-RB 510 CG3948-PB 1..479 17..495 2395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RA 694 CG3948-RA 39..560 17..538 2610 100 Plus
zetaCOP-RC 671 CG3948-RC 34..537 35..538 2520 100 Plus
zetaCOP-RB 1030 CG3948-RB 39..517 17..495 2395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 402..34 1845 100 Minus
3L 28110227 3L 16672452..16672545 495..402 470 100 Minus
3L 28110227 3L 16671798..16671844 538..492 235 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:05:02 has no hits.

BO28164.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:12 Download gff for BO28164.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RA 39..560 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:56 Download gff for BO28164.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RA 39..560 17..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:12 Download gff for BO28164.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RA 39..560 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:12 Download gff for BO28164.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16671795..16671842 494..540 95 <- Minus
3L 16672454..16672544 403..493 100 <- Minus
3L 16673057..16673424 35..402 100 <- Minus
3L 16673482..16673499 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:56 Download gff for BO28164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665554..16665644 403..493 100 <- Minus
arm_3L 16666157..16666524 35..402 100 <- Minus
arm_3L 16666582..16666599 17..34 100   Minus
arm_3L 16664895..16664942 494..540 95 <- Minus

BO28164.pep Sequence

Translation from 16 to 556

> BO28164.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVLQSAREQLKWSILKASFLDH

BO28164.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-PA 174 CG3948-PA 1..174 1..174 882 100 Plus
zetaCOP-PC 163 CG3948-PC 1..163 12..174 824 100 Plus
zetaCOP-PB 169 CG3948-PB 1..160 1..160 813 100 Plus