Clone BO28165 Report

Search the DGRC for BO28165

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:65
Vector:pDNR-Dual
Associated Gene/Transcriptprimo-1-RA
Protein status:BO28165.pep: Imported from assembly
Sequenced Size:499

Clone Sequence Records

BO28165.complete Sequence

499 bp assembled on 2011-06-17

GenBank Submission: KX796240

> BO28165.complete
GAAGTTATCAGTCGACATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCA
ACATCTGCAGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAG
AAGGCGAATGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTG
GCACGTGGGCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGC
ACGGCCTCAAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTC
TCGGAATTCGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCT
AAGGCGTCTGGCGCCCAAGGGCTCCAAGGCGGAGCTCCTCATGCTGGGCG
ATTTCGGACTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGAG
CGTGGAGCCGAGGGCTTTGAGACCGCCTATCAGCAGTGCGTGGTTGCCTG
TGCCGCCTTCATGAAAGAGCGCCTCCAGAAAGCAAGCTTTCTAGACCAT

BO28165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RB 468 CG33748-PB 1..465 17..481 2325 100 Plus
primo-1-RA 468 CG33748-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RB 588 CG33748-RB 71..535 17..481 2325 100 Plus
primo-1-RA 1336 CG33748-RA 819..1283 17..481 2325 100 Plus
primo-2-RC 1336 CG33747-RC 819..1283 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13710308..13710659 398..47 1760 100 Minus
3R 32079331 3R 13710070..13710153 481..398 420 100 Minus
Blast to na_te.dros performed 2014-11-26 15:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1053..1120 161..228 105 65.2 Plus

BO28165.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:13 Download gff for BO28165.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 819..1283 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:03 Download gff for BO28165.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 819..1283 17..483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:23 Download gff for BO28165.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 819..1283 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:23 Download gff for BO28165.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710067..13710153 398..483 97 <- Minus
3R 13710309..13710658 48..397 100 <- Minus
3R 13710723..13710753 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:03 Download gff for BO28165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9535789..9535875 398..483 97 <- Minus
arm_3R 9536031..9536380 48..397 100 <- Minus
arm_3R 9536445..9536475 17..47 100   Minus

BO28165.pep Sequence

Translation from 16 to 499

> BO28165.pep
MVRKVLMICLGNICRSPIAEVVMVDTLEKANVKDVEVDSAAIGGWHVGNR
ADPRAISTLQKHGLKCTHIVRQIRKQDFSEFDYIFGMDEDNMSELRRLAP
KGSKAELLMLGDFGLEKKNRIIEDPYYERGAEGFETAYQQCVVACAAFMK
ERLQKASFLDH

BO28165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-PB 155 CG33748-PB 1..155 1..155 805 100 Plus
primo-1-PA 155 CG33748-PA 1..155 1..155 805 100 Plus
primo-2-PC 164 CG33747-PC 10..157 5..151 397 50 Plus
CG31469-PA 164 CG31469-PA 2..151 4..150 318 41.3 Plus
CG14297-PA 250 CG14297-PA 4..148 3..145 227 34.9 Plus