BO28166.complete Sequence
1354 bp assembled on 2011-07-18
GenBank Submission: KX794068
> BO28166.complete
GAAGTTATCAGTCGACATGCTGGGCCTGCGACGAGTTCTGCGATTGGGTG
CACTGCGTCAGCTTCGCTCGTTAAGTGGCAAGCCGCAAGGCGATGTCCTT
CCCGGGAGCTGCGGAGTCCTGATAATAGGTGGCGGTGGCATGGGCGCCTC
CTCCGCTTTCTGGCTGAAGTCCCGGGCCCTGCAGCTGGGCCGCAAGCTCA
ATGTGCTGGTGGTGGAGCGCGATGCTGGTTACACCAGCGCATCTACAGTG
CTTTCTGTAGGCGGAGTGCGGCAGCAGTTCTCTTTGGCCGAGAACATAGA
GATGTCGCTCTTCGGATACAACTTCGTGGTTAACGGCAGGGAGCATCTGG
GCGACGTGGATCTGTGCTACCAGCCGAACGGCTACCTGATCCTTGCCTCC
GAGAAGGGAGCCCACATCCTAGCAAAGAACTCAAAGCTACAGAACGAGCT
GGGGGCCCGAAATGAGCTGCTAGGCCCGGAGGCACTGCGTCAGCGGTTTC
CGTGGTTGTCCACAGAGGGCGTGGAGCTGGGATGCCACGGGATTGACAAG
GAGGGATGGTTTGATCCGTGGGCCCTGCTCATGGGCTACAAGAAGAAGGC
CCGTGCATTGGGGGCGAATTTCGCGAACGGTTCGGTAGTGGGTTTTGAGT
GGAACGATTCGGGCGGCCTTTCTGGAGCTGTGGTCGACGCCGGAGATGTG
TTGCAGCGCACGGTGAAGTTTGACACGTGCGTTCTGGCAGCGGGAGCGTA
CTCGGGTCAGGTGGCGCGTCTGGCAGGGATTGGTGATAAGGAAGCAAAGG
AGGCTTCCCTGAGTGTAGCCCTGCCGGTGGAGCCTCGCAAGCGATACGTC
TATGTGGTTAGCACTCAGGGTAAGAATTGTCCTGGGCTAGCCACACCTCT
GACCGTTGATCCCGATGGCACCTACTTCAGGCGGGACGGTCTTTGCGGCA
ACTTCCTGTGCGGCCGCAGTCCAAACGAAGACGAGGAGCCGGAGTGCGAA
ACGCTGGACGTGGACCACGGGTACTTTGAAACGGATGTCTGGCCCACACT
GGCGAACCGAGTTCCTGCTTTTGAGTCTGTGAAGATACAGAGCAGCTGGG
CGGGCTTCTATGACCACAACACATTTGACGCAAACGGCGTCATCGGCAGG
CATCCTCACTACAGCAATCTCTTCATTGCCGCAGGCTTCAGTGGGCACGG
CATTCAGCAGACTCCCGCCGTGGGTCGAGCCATTTCCGAACTAATCTTGG
ACGGCAAGTTTACCACACTGGATCTGTCGCGCCTCGGCTTCGAACGCCTT
GTAAACCAACAGCCTATGCACGAAGTGAATATCGTTGCAAGCTTTCTAGA
CCAT
BO28166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3270-RA | 1323 | CG3270-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3270-RA | 1449 | CG3270-RA | 11..1330 | 17..1336 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6693962..6695068 | 230..1336 | 5535 | 100 | Plus |
| 2R | 25286936 | 2R | 6693440..6693652 | 17..229 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:38:42 has no hits.
BO28166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:45 Download gff for
BO28166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3270-RA | 1..1320 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:24 Download gff for
BO28166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3270-RA | 11..1330 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:33 Download gff for
BO28166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3270-RA | 11..1330 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:33 Download gff for
BO28166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6693440..6693652 | 17..229 | 100 | -> | Plus |
| 2R | 6693962..6695068 | 230..1338 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:24 Download gff for
BO28166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2580945..2581157 | 17..229 | 100 | -> | Plus |
| arm_2R | 2581467..2582573 | 230..1338 | 99 | | Plus |
BO28166.pep Sequence
Translation from 16 to 1354
> BO28166.pep
MLGLRRVLRLGALRQLRSLSGKPQGDVLPGSCGVLIIGGGGMGASSAFWL
KSRALQLGRKLNVLVVERDAGYTSASTVLSVGGVRQQFSLAENIEMSLFG
YNFVVNGREHLGDVDLCYQPNGYLILASEKGAHILAKNSKLQNELGARNE
LLGPEALRQRFPWLSTEGVELGCHGIDKEGWFDPWALLMGYKKKARALGA
NFANGSVVGFEWNDSGGLSGAVVDAGDVLQRTVKFDTCVLAAGAYSGQVA
RLAGIGDKEAKEASLSVALPVEPRKRYVYVVSTQGKNCPGLATPLTVDPD
GTYFRRDGLCGNFLCGRSPNEDEEPECETLDVDHGYFETDVWPTLANRVP
AFESVKIQSSWAGFYDHNTFDANGVIGRHPHYSNLFIAAGFSGHGIQQTP
AVGRAISELILDGKFTTLDLSRLGFERLVNQQPMHEVNIVASFLDH
BO28166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3270-PA | 440 | CG3270-PA | 1..440 | 1..440 | 2310 | 100 | Plus |
| l(2)37Bb-PA | 515 | CG10655-PA | 98..515 | 32..442 | 1050 | 49.5 | Plus |
