BO28168.complete Sequence
787 bp assembled on 2011-06-17
GenBank Submission: KX795804
> BO28168.complete
GAAGTTATCAGTCGACATGTTCATCGAAAGCTTCCTGCTGCTCCTGGCGC
TAGACTTCCTGTCCGCAGGACAAGTAAACCGATGGGAACAACGTATCATC
GGCGGAGAACCCATTGGAATCGAACAGGTTCCCTGGCAGGTGTCTTTGCA
ATATTTTGGCGACCATGTGTGCGGCGGCTCCATTTACAGCGAAAATATCA
TCGTTACTGCGGCCCATTGTTTTTTTGATGAGGAAGGCAATCGGCTAGAT
GACCAAGGATATCAAGTTCGCGCAGGATCCGCCCTAACAGATTCCAATGG
AACTCTTGTCGATGTGGCCGCTTTAATAATCCACGAAGAATATGCGTTTG
ATCTTAATATAAACGACATCGCAATCGTGAGGTTAAGTACGCCACTTGAG
TTCACAAGCAAAGTTCAACCCATTCCTTTGGCTAAGACGAATCCTTATCC
TAGATCGATTGCCCTCGTCTCTGGCTGGGGAGTGTCTTATATCTTAAACG
ATTCGACGAATTTATACCCAACACATCTTCAAGGATTAGCCCTGCACATC
AAAAGCATTTTCTCCTGCAGACTCTTTGATCCTTCACTACTATGCGCAGG
CACTTATGGAAGAACCGCTTGTCATGGCGACTCTGGAGGACCATTGGTGG
TCAACAAACAACTTGTGGGTGTTGTCTCCTGGGGTCGAAAAGGTTGCGTA
TCCAGTGCATTCTTCGTCAGTGTTCCTTATTTCCGTGAATGGATCTTAAA
TGCTATTGCCTCAATTCAGGCAAGCTTTCTAGACCAT
BO28168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17234-RA | 756 | CG17234-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
| Send2-RA | 720 | CG18125-PA | 1..203 | 17..219 | 445 | 81.3 | Plus |
| Send2-RA | 720 | CG18125-PA | 306..426 | 361..481 | 365 | 86.8 | Plus |
| Send2-RA | 720 | CG18125-PA | 521..686 | 591..756 | 305 | 78.9 | Plus |
| Send2-RA | 720 | CG18125-PA | 213..286 | 253..326 | 205 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17234-RA | 808 | CG17234-RA | 29..787 | 11..769 | 3780 | 99.9 | Plus |
| Send2-RA | 774 | CG18125-RA | 35..237 | 17..219 | 445 | 81.3 | Plus |
| Send2-RA | 774 | CG18125-RA | 340..460 | 361..481 | 365 | 86.8 | Plus |
| Send2-RA | 774 | CG18125-RA | 555..720 | 591..756 | 305 | 78.9 | Plus |
| Send2-RA | 774 | CG18125-RA | 247..320 | 253..326 | 205 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2253073..2253831 | 11..769 | 3780 | 99.9 | Plus |
| 2L | 23513712 | 2L | 14346452..14346654 | 219..17 | 445 | 81.3 | Minus |
| 2L | 23513712 | 2L | 14346229..14346349 | 481..361 | 365 | 86.8 | Minus |
| 2L | 23513712 | 2L | 14345969..14346134 | 756..591 | 305 | 78.9 | Minus |
| 2L | 23513712 | 2L | 14346369..14346442 | 326..253 | 205 | 85.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:00 has no hits.
BO28168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:14 Download gff for
BO28168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 6..753 | 22..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:06 Download gff for
BO28168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 40..787 | 22..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:31 Download gff for
BO28168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17234-RA | 40..787 | 22..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:31 Download gff for
BO28168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2253084..2253831 | 22..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:06 Download gff for
BO28168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2253084..2253831 | 22..771 | 99 | | Plus |
BO28168.pep Sequence
Translation from 16 to 787
> BO28168.pep
MFIESFLLLLALDFLSAGQVNRWEQRIIGGEPIGIEQVPWQVSLQYFGDH
VCGGSIYSENIIVTAAHCFFDEEGNRLDDQGYQVRAGSALTDSNGTLVDV
AALIIHEEYAFDLNINDIAIVRLSTPLEFTSKVQPIPLAKTNPYPRSIAL
VSGWGVSYILNDSTNLYPTHLQGLALHIKSIFSCRLFDPSLLCAGTYGRT
ACHGDSGGPLVVNKQLVGVVSWGRKGCVSSAFFVSVPYFREWILNAIASI
QASFLDH
BO28168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17234-PA | 251 | CG17234-PA | 1..251 | 1..251 | 1317 | 100 | Plus |
| Send2-PA | 239 | CG18125-PA | 1..235 | 1..253 | 749 | 62.1 | Plus |
| Send1-PA | 255 | CG17012-PA | 1..243 | 1..247 | 509 | 45.5 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 22..256 | 18..250 | 417 | 40.6 | Plus |
| CG30025-PA | 253 | CG30025-PA | 22..251 | 18..245 | 408 | 39.7 | Plus |
