Clone BO28169 Report

Search the DGRC for BO28169

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG18125-RA
Protein status:BO28169.pep: Imported from assembly
Sequenced Size:751

Clone Sequence Records

BO28169.complete Sequence

751 bp assembled on 2011-06-21

GenBank Submission: KX798851

> BO28169.complete
GAAGTTATCAGTCGACATGTTCATCCAAAGCTTCCTGTTGCTATTGGCGC
TCAATTCCCTGTCCGCAGGACCAGTAATCCGGCCGGAAGAACGCATTATC
GGTGGACAACCCATTGGAATCGAGGAGGCACCATGGCAGGTGTCCATACA
ACGTGATGGCAAACATTTATGCGGTGGCTCCATTTACAGCGCAGATATCA
TCATTACTGCGGCCCATTGCGTCCAGGGCCAGGGATATCAAGTTCGGGCA
GGATCCGCCTTGAAGAACTCCAATGGAAGTGTTGTCGATGTGGCCGCTAT
AAGGACGCATGAGGGATTAGGAAACGACATCGCCATCGTGCGGCTAAGTA
AGCCACTTGAGTTCACAAACCAAGTTCAGCCCATTCCATTGGCCAAGACA
AATCCCCCGCCTGGATCGATTGCCTTCGTCTCTGGCTGGGGAAGTTCTTC
TTATTACTCACATCCCATCGATCTTCAAGGAGTAAACCTTTACATTCAAT
GGCCGTACTATTGTGGATTAACTGAACCGTCAAGAATATGCGCCGGATCT
TTTGGAAGGGCGGCTTGTAAAGGAGACTCTGGTGGACCGTTGGTGTTTGA
CCAACAACTTGTGGGTGTTGTATCCGGGGGTACAAAGGATTGCACGTATA
GTTCAATCTACACTAGTGTCCCATATTTCCGTGAATGGATCTTAAATGCT
ATCGATGAAATAATGTCAGCGAATCGAAACAAAGCAAGCTTTCTAGACCA
T

BO28169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Send2-RA 720 CG18125-PA 1..717 17..733 3585 100 Plus
CG17234-RA 756 CG17234-PA 1..203 17..219 445 81.3 Plus
CG17234-RA 756 CG17234-PA 345..465 322..442 365 86.8 Plus
CG17234-RA 756 CG17234-PA 575..740 537..702 305 78.9 Plus
CG17234-RA 756 CG17234-PA 237..310 229..302 205 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Send2-RA 774 CG18125-RA 35..751 17..733 3585 100 Plus
CG17234-RA 808 CG17234-RA 29..237 11..219 460 81.3 Plus
CG17234-RA 808 CG17234-RA 379..499 322..442 365 86.8 Plus
CG17234-RA 808 CG17234-RA 609..774 537..702 305 78.9 Plus
CG17234-RA 808 CG17234-RA 271..344 229..302 205 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14345938..14346654 733..17 3585 100 Minus
2L 23513712 2L 2253073..2253281 11..219 460 81.3 Plus
2L 23513712 2L 2253423..2253543 322..442 365 86.8 Plus
2L 23513712 2L 2253653..2253818 537..702 305 78.9 Plus
2L 23513712 2L 2253315..2253388 229..302 205 85.1 Plus
Blast to na_te.dros performed on 2014-11-26 15:23:11 has no hits.

BO28169.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 12:42:03 Download gff for BO28169.complete
Subject Subject Range Query Range Percent Splice Strand
CG18125-RA 6..717 22..735 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:05 Download gff for BO28169.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 40..751 22..735 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:08 Download gff for BO28169.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 40..751 22..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:08 Download gff for BO28169.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14345936..14346649 22..735 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:05 Download gff for BO28169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14345936..14346649 22..735 99   Minus

BO28169.pep Sequence

Translation from 16 to 751

> BO28169.pep
MFIQSFLLLLALNSLSAGPVIRPEERIIGGQPIGIEEAPWQVSIQRDGKH
LCGGSIYSADIIITAAHCVQGQGYQVRAGSALKNSNGSVVDVAAIRTHEG
LGNDIAIVRLSKPLEFTNQVQPIPLAKTNPPPGSIAFVSGWGSSSYYSHP
IDLQGVNLYIQWPYYCGLTEPSRICAGSFGRAACKGDSGGPLVFDQQLVG
VVSGGTKDCTYSSIYTSVPYFREWILNAIDEIMSANRNKASFLDH

BO28169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Send2-PA 239 CG18125-PA 1..239 1..239 1258 100 Plus
CG17234-PA 251 CG17234-PA 1..250 1..232 747 62.8 Plus
Send1-PA 255 CG17012-PA 1..244 1..230 523 47.1 Plus
alphaTry-PA 256 CG18444-PA 30..256 26..232 431 44.7 Plus
CG30025-PA 253 CG30025-PA 4..251 6..227 425 40.2 Plus