Clone BO28173 Report

Search the DGRC for BO28173

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG15571-RA
Protein status:BO28173.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO28173.complete Sequence

490 bp assembled on 2011-06-17

GenBank Submission: KX799816

> BO28173.complete
GAAGTTATCAGTCGACATGACAGCCTTCAATAGGGATCATCACTTCGCGT
TTCTAATGATCGTTGCCCTCGTGGGAAGTAGCTGTATTTTAGGATTTTCC
GATGCCCAAACCTTCACAGCCGAGGATCGTAGCTCTATACAGAAATTCAT
GGATTCATTGTTGAACTTCCTGGAACTGGAAATTAGTAATATAACAACCA
CATTGCCGCCAACTTCGAATGGCACTACCTTGGAGACCACTACTCTGGCA
CCTGGAAATTCCACAGAAGTGACCACAGAGGTTTCGCAAACATCTACTAA
CTCCACATCGAGTGCCTTGGATACGACCACGAGCAGTTTGAATTCCACAA
CGGAGGATAGCGAAAATACAACCGCAACCACAACCACCGAAGCAAATCCC
ACTACTATGAGGCGCAGGATTTGCTTCAAGCGTTTCTGCTACAAGTTTAG
CAACGACAAGGGTTACATAGTTGCAAGCTTTCTAGACCAT

BO28173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15571-RA 459 CG15571-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15571-RA 522 CG15571-RA 37..497 12..472 2290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4216898..4217358 472..12 2290 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:08:06 has no hits.

BO28173.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:16 Download gff for BO28173.complete
Subject Subject Range Query Range Percent Splice Strand
CG15571-RA 1..456 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:34 Download gff for BO28173.complete
Subject Subject Range Query Range Percent Splice Strand
CG15571-RA 42..497 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:08 Download gff for BO28173.complete
Subject Subject Range Query Range Percent Splice Strand
CG15571-RA 42..497 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:08 Download gff for BO28173.complete
Subject Subject Range Query Range Percent Splice Strand
X 4216896..4217353 17..474 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:34 Download gff for BO28173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4110929..4111386 17..474 99   Minus

BO28173.pep Sequence

Translation from 16 to 490

> BO28173.pep
MTAFNRDHHFAFLMIVALVGSSCILGFSDAQTFTAEDRSSIQKFMDSLLN
FLELEISNITTTLPPTSNGTTLETTTLAPGNSTEVTTEVSQTSTNSTSSA
LDTTTSSLNSTTEDSENTTATTTTEANPTTMRRRICFKRFCYKFSNDKGY
IVASFLDH

BO28173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15571-PA 152 CG15571-PA 1..152 1..152 770 100 Plus