BO28179.complete Sequence
1981 bp assembled on 2011-07-18
GenBank Submission: KX793922
> BO28179.complete
GAAGTTATCAGTCGACATGAGAGTGTTTTTGGTGGTGTTGAGTGTGCTGT
CTGTGGCGGTGGCCACCAAGTGTCCGTATTCGGCAATGGAACCCTCCTTG
TCCAGGTCCAAACGGAGTTCTTTTGATATTCGCCCAGGAGTTAGTGACGG
AAGTTTGGATGCCTTGATTAAAGAATTTATGCCCAAGTACAATGGCAACA
ATGTTCACAATAGTTGGGCCGAGCCTTCTGCCTCCCAACAACCTTTAAGA
TGTGGAGTTCCGCCTCGCAACTGCTTGAATGATACTCGAAATCTGCACTA
CCGAACCTTGGATGGATCATGCAACAATCTGTTGTATCCGGAGTTTGGAA
TTGCCGTTTCGCGCTATCGTAGGCTTTTGCCTCCTCGCCAAGTGGAACAG
GCTCCGAATGCCCGTTTGATCTCCTTGTCGCTGTACGGCGAGCAGACGAG
GAACGATAGGTTCCGCACCATGGCGGCCATGCAATGGGGCCAGTTTGTTG
CCCACGATATCAGCCAATTGAGCACACAGGGCGCTCCTCAAGATTGCTGT
GCCGAGCCGCGTCATCCTCGCTGTCTGCCAATCAACCTGCCCCGTGGTGG
TCCCATCGCATACCATACGGGCAAGACCTGTCTGCACTTTGCACGCAGTG
TGTCGGATGCGGATGCCATATGCCCAAAGGTTGAGGAACCCCAACCGGAA
AAGCTAACGGTGGCAACTGCTTACCTGGATCTCTCCTCCATCTACGGCAA
CAATCCCTCGCAAAACAGAAAGGTCCGCTTGTTCAAGGGCGGACTTCTGA
AGACCAGCTACACGAACGGACAACACTGGCTACCGGTGAGCCAAAATGAG
AATGGCGAGTGCGGTGCCAAGAGTGAGTGCTACATCGTACCGGACATTCG
GAATCGTTTCTCGCCCACCATCGCCCTATTGCAGACTCTGTTGGTCCGAG
AGCACAATCGTCTGGCCGAAAATCTAGCGCTGATTAATCCCGATCATAGT
GACGAGCGCATCTTCCAGGAGGCACGCAAGATTAACATTGCGCAGTTCCA
GAAGATCACATACTATGACTGGCTTCCACTGTTCGTTGGTCGCACCTATA
CCTACTTGAACGGACTGATTTATCCAGTGGAGCCCACCGAGTATGTCAAC
GACTACGACGAGACGGTTAATCCTGCTGCCTATGCGGAGTTTTCTGCTGC
CGCCTTTAGATACGCCCACACCCAAATCCCCGGATGGTTTTCATTGGTTG
CCCCCAATCGGAGATCTAATAGAACCATGCGCCTGAGCGACTTCCTCGAC
CGTACAGAGACTATTCGTTTACTGGACACATCCGACAACTTCGATGCCCT
GTTGAGAGGCTTGGCTACCCAGTTGCACAAGCGATCGGATGGGAACATTG
ATCGGGAGATCAAGCACTACTTCAACCGCAAGGAGTTCGAGGAATACGGT
TCGGATCTGAAGTCTATAGATATTCAGAGGGCACGAGACTTCGGATTGGC
TTCCTACAACGATGTGCGAGAGTTTTGTGGTCTGCGACGAGCTGTCGATT
GGGCGGATTTCGCTCACGAAATTCCCGGAGAGAAAATATCGCTGTTGCGC
CGACTGTACGCCACTCCGGATGACGTGGAACTTGGTGTTGGCGGTACCTT
GGAGTACCATGTCCCAGATGCTCTATTCGGACCAACTTTGTTGTGTGTGA
TTGGAAAACAGTTCCTTAACACGCGACGTGGCGATAGATTCTTCTTTGAG
CGGGAGAACGAAGGAGGTTTTTCGCGCGCTCAATTGGCCGAGATCCGGAA
AGTGAGCCTGTCCAGCTTGTTCTGCAGCAATGCCAACTATCTGCATTTAA
TCCAGCCAAACGTATTTGTCTTCCCGAATTCACATAATCTACTACTGAAC
TGCAATTTTATTCCTCAAATCGATCTAAGCAAATGGCAGGATCTCAGGCC
TCAGCTTGTTCACGCAAGCTTTCTAGACCAT
BO28179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4009-RC | 1950 | CG4009-PC | 1..1947 | 17..1963 | 9705 | 99.9 | Plus |
| CG4009-RB | 1950 | CG4009-PB | 1..1947 | 17..1963 | 9705 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4009-RC | 2214 | CG4009-RC | 28..1974 | 17..1963 | 9705 | 99.9 | Plus |
| CG4009-RB | 2086 | CG4009-RB | 28..1974 | 17..1963 | 9705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17034793..17036018 | 1242..17 | 6100 | 99.8 | Minus |
| 3R | 32079331 | 3R | 17034388..17034727 | 1582..1243 | 1700 | 100 | Minus |
| 3R | 32079331 | 3R | 17034134..17034331 | 1778..1581 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 17033965..17034071 | 1884..1778 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 17033828..17033906 | 1963..1885 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:39:06 has no hits.
BO28179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:46 Download gff for
BO28179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4009-RB | 28..1974 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:35 Download gff for
BO28179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4009-RB | 28..1974 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:42 Download gff for
BO28179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4009-RB | 28..1974 | 17..1965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:42 Download gff for
BO28179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17033826..17033906 | 1885..1965 | 97 | <- | Minus |
| 3R | 17033965..17034070 | 1779..1884 | 100 | <- | Minus |
| 3R | 17034134..17034329 | 1583..1778 | 100 | <- | Minus |
| 3R | 17034388..17034727 | 1243..1582 | 100 | <- | Minus |
| 3R | 17034793..17036018 | 17..1242 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:35 Download gff for
BO28179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12859548..12859628 | 1885..1965 | 97 | <- | Minus |
| arm_3R | 12859687..12859792 | 1779..1884 | 100 | <- | Minus |
| arm_3R | 12859856..12860051 | 1583..1778 | 100 | <- | Minus |
| arm_3R | 12860110..12860449 | 1243..1582 | 100 | <- | Minus |
| arm_3R | 12860515..12861740 | 17..1242 | 99 | | Minus |
BO28179.pep Sequence
Translation from 16 to 1981
> BO28179.pep
MRVFLVVLSVLSVAVATKCPYSAMEPSLSRSKRSSFDIRPGVSDGSLDAL
IKEFMPKYNGNNVHNSWAEPSASQQPLRCGVPPRNCLNDTRNLHYRTLDG
SCNNLLYPEFGIAVSRYRRLLPPRQVEQAPNARLISLSLYGEQTRNDRFR
TMAAMQWGQFVAHDISQLSTQGAPQDCCAEPRHPRCLPINLPRGGPIAYH
TGKTCLHFARSVSDADAICPKVEEPQPEKLTVATAYLDLSSIYGNNPSQN
RKVRLFKGGLLKTSYTNGQHWLPVSQNENGECGAKSECYIVPDIRNRFSP
TIALLQTLLVREHNRLAENLALINPDHSDERIFQEARKINIAQFQKITYY
DWLPLFVGRTYTYLNGLIYPVEPTEYVNDYDETVNPAAYAEFSAAAFRYA
HTQIPGWFSLVAPNRRSNRTMRLSDFLDRTETIRLLDTSDNFDALLRGLA
TQLHKRSDGNIDREIKHYFNRKEFEEYGSDLKSIDIQRARDFGLASYNDV
REFCGLRRAVDWADFAHEIPGEKISLLRRLYATPDDVELGVGGTLEYHVP
DALFGPTLLCVIGKQFLNTRRGDRFFFERENEGGFSRAQLAEIRKVSLSS
LFCSNANYLHLIQPNVFVFPNSHNLLLNCNFIPQIDLSKWQDLRPQLVHA
SFLDH
BO28179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4009-PC | 649 | CG4009-PC | 1..649 | 1..649 | 3446 | 100 | Plus |
| CG4009-PB | 649 | CG4009-PB | 1..649 | 1..649 | 3446 | 100 | Plus |
| Pxd-PC | 688 | CG3477-PC | 91..673 | 79..642 | 1212 | 43.1 | Plus |
| Pxd-PB | 690 | CG3477-PB | 93..675 | 79..642 | 1212 | 43.1 | Plus |
| Pxd-PA | 690 | CG3477-PA | 93..675 | 79..642 | 1212 | 43.1 | Plus |
