Clone BO28181 Report

Search the DGRC for BO28181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG17169-RB
Protein status:BO28181.pep: Imported from assembly
Sequenced Size:376

Clone Sequence Records

BO28181.complete Sequence

376 bp assembled on 2011-06-17

GenBank Submission: KX797940

> BO28181.complete
GAAGTTATCAGTCGACATGCGATGGCAGTTGGCAATTATGTGGCTTTTCG
CCTCCGCGTTTGCAGTACCTTTCATAAAGTGGCGCCGCCAAATAGTTACG
CCGAAGCACTTGATGGCACCACCTTTGTCACCCATCGCACAGGACAAGGT
TGTGGTCACCCCGCAGAAGCTTAGAGAAGTGGCTGACTTTAAGGCCATGA
TCCAAAAGGCCGTCGATGAGAACACTTACGTGGTGGCCGCTGCACCATCA
AAGGATTTTCTAGCGACACTGGGTGGAAATTGGGGAGCACCTATATCCTT
GCCTCACTCCTGGACCGCGCCAGCCTTTAATCTTACCTTTTTTTGGCATG
GATTTGGCGCAAGCTTTCTAGACCAT

BO28181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-RB 345 CG17169-PB 1..342 17..358 1695 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-RB 532 CG17169-RB 18..359 17..358 1695 99.7 Plus
CG17159-RF 4662 CG17159-RF 4259..4365 358..252 535 100 Minus
CG17162-RH 4590 CG17162-RH 4187..4293 358..252 535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23084689..23084926 17..254 1175 99.6 Plus
X 23542271 X 23085257..23085363 252..358 535 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:09:16 has no hits.

BO28181.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:17 Download gff for BO28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 18..359 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:48 Download gff for BO28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 18..359 17..360 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:29 Download gff for BO28181.complete
Subject Subject Range Query Range Percent Splice Strand
CG17169-RB 18..359 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:29 Download gff for BO28181.complete
Subject Subject Range Query Range Percent Splice Strand
X 23084689..23084925 17..253 99 -> Plus
X 23085259..23085363 254..360 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:48 Download gff for BO28181.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 63507..63743 17..253 99 -> Plus
XHet 64077..64181 254..360 98   Plus

BO28181.pep Sequence

Translation from 16 to 376

> BO28181.pep
MRWQLAIMWLFASAFAVPFIKWRRQIVTPKHLMAPPLSPIAQDKVVVTPQ
KLREVADFKAMIQKAVDENTYVVAAAPSKDFLATLGGNWGAPISLPHSWT
APAFNLTFFWHGFGASFLDH

BO28181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17169-PB 114 CG17169-PB 1..114 1..114 613 100 Plus