Clone BO28186 Report

Search the DGRC for BO28186

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG43049-RB
Protein status:BO28186.pep: Imported from assembly
Sequenced Size:655

Clone Sequence Records

BO28186.complete Sequence

655 bp assembled on 2011-06-17

GenBank Submission: KX800134

> BO28186.complete
GAAGTTATCAGTCGACATGATTAAACTTATGTCAGTTAAATACCGCCTAT
GTTCTCTGGGAAGTTCCTACGAAGTGATTGAAGATGCCTGCCGGGATAGA
TCAGGTTTCTTTAGTTTATTGGAATCCAGGAAATTCAGGATTGTGAGGCG
CTGCTTTGCGAAATACCTGAGTGAAGGCATACCCTCTTATCCTATATATT
ATTGGTTCGTCCTCATATTTAGTCTATACGGAGCGTTTAGGAGGTCAATC
CTCACCAATAAGGTTGATGGGAGCTTCGAAAATCCAAAAAATAAGAGAAG
ACTCAGAATGGCTGGAGCATTTATACAAGCCAATATCTGGATGCATCTGT
TGTATGCGGCTTTATTGGTTTCACCTCATCACATGGCTCCCTGGTTATTC
GTCCATTTGGGGATACTTGCTTGCAAGTTGACTGCGGCGACCATTAAAGG
ACACTTCAGATGCCAGGGTGATCTTCGAACCCGGACCACAATAAATGCAA
TTGTATATGTGCTGGTTATAGGTCTAGTTTACCTGGCTATGAGGTCATTT
ACCACTGCCTTAGCAAGGGATGTTCCAGAAAACCTAAGGCTCTGCTTGAA
ATTCATAAATCCTTTGCTCAAATATGTAAGAGGCCATGCAAGCTTTCTAG
ACCAT

BO28186.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG43049-RB 624 CG43049-PB 1..621 17..637 3105 100 Plus
CG43049-RA 642 CG43049-PA 1..639 17..637 2890 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG43049-RB 724 CG43049-RB 79..699 17..637 3105 100 Plus
CG43049-RA 743 CG43049-RA 80..718 17..637 2890 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18925813..18926083 367..637 1355 100 Plus
3L 28110227 3L 18925169..18925387 17..235 1095 100 Plus
3L 28110227 3L 18925453..18925587 235..369 675 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:10:04 has no hits.

BO28186.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:18 Download gff for BO28186.complete
Subject Subject Range Query Range Percent Splice Strand
CG43049-RB 79..699 17..639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:57 Download gff for BO28186.complete
Subject Subject Range Query Range Percent Splice Strand
CG43049-RB 79..699 17..639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:43 Download gff for BO28186.complete
Subject Subject Range Query Range Percent Splice Strand
CG43049-RB 79..699 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:43 Download gff for BO28186.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18925169..18925387 17..235 100 -> Plus
3L 18925454..18925585 236..367 100 -> Plus
3L 18925814..18926083 368..639 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:57 Download gff for BO28186.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18918269..18918487 17..235 100 -> Plus
arm_3L 18918554..18918685 236..367 100 -> Plus
arm_3L 18918914..18919183 368..639 99   Plus

BO28186.pep Sequence

Translation from 16 to 655

> BO28186.pep
MIKLMSVKYRLCSLGSSYEVIEDACRDRSGFFSLLESRKFRIVRRCFAKY
LSEGIPSYPIYYWFVLIFSLYGAFRRSILTNKVDGSFENPKNKRRLRMAG
AFIQANIWMHLLYAALLVSPHHMAPWLFVHLGILACKLTAATIKGHFRCQ
GDLRTRTTINAIVYVLVIGLVYLAMRSFTTALARDVPENLRLCLKFINPL
LKYVRGHASFLDH

BO28186.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG43049-PB 207 CG43049-PB 1..207 1..207 1081 100 Plus
CG43049-PA 213 CG43049-PA 1..213 1..207 1064 97.2 Plus