Clone BO28187 Report

Search the DGRC for BO28187

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:281
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG9236-RB
Protein status:BO28187.pep: Imported from assembly
Sequenced Size:601

Clone Sequence Records

BO28187.complete Sequence

601 bp assembled on 2011-06-17

GenBank Submission: KX793923

> BO28187.complete
GAAGTTATCAGTCGACATGGGCAACAAAGTTGTGACATTTACGGAACAGG
AATTGGATGACTACCAGGATTGCACGTTCTTCACGCGCAAGGAGATCCTG
CGGGTTCACAAGCGATTCCGTGAGCTGCGGCCGGATCTGGTGCCTCGCCA
AATGACCGAAGGTCAGGCCTCCAGTGTTAAGGTGCCCTGCGAATGCATTG
AGAAGATGCCCGAGTTGCGTGAGAATCCCTTTCGCCGGCGAATATGCGAG
GCCTTCTCACGCGATGGCCAGGGCAATTTATCCTTTGAGGACTTTCTGGA
CGCCCTCTCCGTTTTTAGCGAGCAGGCGCCGAGGGACATTAAAGTTTTCT
ACGCTTTCAAAATTTATGATTTCGATCAGGACGGCTTCATCGGGCACGCC
GACCTCATGTCCTGCCTGACAACAATGACCAAGAACGAGCTGAGTCCGGA
GGAGCACCAGCAGATTGCCGACAAGGTAATCGAGGAGGCCGACGTCGATG
GCGATGGCAAGTTATCAATTTTGGAGTTCGAGCACGTTATACTCCGGGCG
CCCGACTTTCTATCCACCTTTCACATCAGAATAGCAAGCTTTCTAGACCA
T

BO28187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cib2-RB 570 CG9236-PB 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cib2-RB 947 CG9236-RB 120..686 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20882187..20882402 368..583 1080 100 Plus
2R 25286936 2R 20880760..20880904 102..246 725 100 Plus
2R 25286936 2R 20881028..20881150 246..368 615 100 Plus
2R 25286936 2R 20880049..20880100 17..68 260 100 Plus
2R 25286936 2R 20880176..20880213 66..103 190 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:10:28 has no hits.

BO28187.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:19 Download gff for BO28187.complete
Subject Subject Range Query Range Percent Splice Strand
CG9236-RB 120..686 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:03 Download gff for BO28187.complete
Subject Subject Range Query Range Percent Splice Strand
Cib2-RB 120..686 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:52 Download gff for BO28187.complete
Subject Subject Range Query Range Percent Splice Strand
Cib2-RB 120..686 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:52 Download gff for BO28187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20881028..20881150 246..368 100 -> Plus
2R 20880049..20880099 17..67 100 -> Plus
2R 20880178..20880212 68..102 100 -> Plus
2R 20880761..20880903 103..245 100 -> Plus
2R 20882188..20882402 369..585 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:03 Download gff for BO28187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16767554..16767604 17..67 100 -> Plus
arm_2R 16767683..16767717 68..102 100 -> Plus
arm_2R 16768266..16768408 103..245 100 -> Plus
arm_2R 16768533..16768655 246..368 100 -> Plus
arm_2R 16769693..16769907 369..585 99   Plus

BO28187.pep Sequence

Translation from 16 to 601

> BO28187.pep
MGNKVVTFTEQELDDYQDCTFFTRKEILRVHKRFRELRPDLVPRQMTEGQ
ASSVKVPCECIEKMPELRENPFRRRICEAFSRDGQGNLSFEDFLDALSVF
SEQAPRDIKVFYAFKIYDFDQDGFIGHADLMSCLTTMTKNELSPEEHQQI
ADKVIEEADVDGDGKLSILEFEHVILRAPDFLSTFHIRIASFLDH

BO28187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cib2-PB 189 CG9236-PB 1..189 1..189 990 100 Plus
CanB2-PB 170 CG11217-PB 12..157 19..175 256 36.9 Plus
CanB2-PA 170 CG11217-PA 12..157 19..175 256 36.9 Plus
CanB-PB 170 CG4209-PB 12..157 19..175 254 36.9 Plus
CanB-PA 170 CG4209-PA 12..157 19..175 254 36.9 Plus