BO28191.complete Sequence
1144 bp assembled on 2011-06-17
GenBank Submission: KX794470
> BO28191.complete
GAAGTTATCAGTCGACATGAGCGAACGGGGCAGCGGGGGAGCGGTGACGG
GGGGTCGGCATGCTCGCGTTAGTCCAACGCCAGGACGTGGCAGCAAGATT
GCGTATACGCCGTGTCCGCGCTCCGAACCGCCGCAGGATCTGGCGCTTGC
CGTTCCGCCGCCGCCGCGCAATTGCCTGGCCATCCCGATGTCCTCACTGC
AAACGGCCAATGGACCCGGCACAAAAGTGAACTTTGGTGGCGGCGCCAAC
TCGGGAGTCACACGAGCGGAACCAATCTCATTGGCCACCCTGGATCGCGA
CTGCTTCATCATTCCCGTGCACAGTGTGGACCGCTTCCTGCCAGCTGGCA
TTCCTCTGCCCGCCTTAAGTGCCGATGGTAAGGCCACAAGCCCTCTAAGT
GTCTTGGAAGTCTCCGATCCGAAGCTGTGCATTCTGGTGCATTTGATGAG
TCCCCTGGAGGCCATCGATCCGGTAATGGAGTCGCCACTAGCGCATCCGC
TGCTCAAGCAGCGCTCCATTGCCGCCGAATTGGTGACCGAAGTGCAGCAG
GCCAACACGGCAGTGGGCGGAATGCTGCTGGCCAACATGGAGAAGAGCTC
TGAGTTCCCCTTCATCTCGTACTACCTGATCAATACGCTGCAAACGGATC
CTTCCAGCTTCTATGCTGGCCTGCGCGTCTCCTCGCTGTCCAAGTTTGAG
CCAAAGGCCCTCAAATACACTGCCGCCCACACACTGGATCTGTATAGCGA
GGTGGCTGCCATTTGCCGGCCGCCGTTGGTTTTGCCCTCCAACGAGGTGG
GCAGCTTCAAGAAGTCGCAGACCGCGGCCACCGGCTACATTATTAGCGTG
TTCAAGGTTTTCGAGGGCGACGATGGCGAACGATTCGAAAAGAACTGGCT
CTACTGGACCGGAGCACGGATGTTGTACAGGTACCTGCCACGTGCCGCGG
GCCTGAGGCGCATCGCCCTGCACAAGAGCACCTCGCAGAAGGGCGACAAG
ATGTATCTGCTGGTTTGCGAGTGCGCCGAGCTGCTGAAGGACATCTCGCT
GGCCGCCTTCCTGATTCCGGCGCTGCGAGCTCGGCTGTGCGGATACACCG
GACTCTATCGACCAATACAGGCCTTCGCAAGCTTTCTAGACCAT
BO28191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42700-RJ | 1113 | CG42700-PJ | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG42700-RH | 1113 | CG42700-PH | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG42700-RC | 1113 | CG42700-PC | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42700-RJ | 4712 | CG42700-RJ | 518..1627 | 17..1126 | 5550 | 100 | Plus |
| CG42700-RH | 2811 | CG42700-RH | 518..1627 | 17..1126 | 5550 | 100 | Plus |
| CG42700-RC | 2164 | CG42700-RC | 518..1627 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12296563..12296812 | 356..605 | 1235 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12280288..12280498 | 17..227 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 12297512..12297710 | 928..1126 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 12297056..12297199 | 715..858 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 12296336..12296465 | 226..355 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 12296871..12296985 | 600..714 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 12297264..12297343 | 855..934 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:15 has no hits.
BO28191.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:21 Download gff for
BO28191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 516..1625 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:19 Download gff for
BO28191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 516..1625 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:06 Download gff for
BO28191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42700-RC | 518..1627 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:06 Download gff for
BO28191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12280288..12280498 | 17..227 | 100 | -> | Plus |
| 2R | 12296338..12296465 | 228..355 | 100 | -> | Plus |
| 2R | 12296563..12296806 | 356..599 | 100 | -> | Plus |
| 2R | 12296871..12296985 | 600..714 | 100 | -> | Plus |
| 2R | 12297056..12297197 | 715..856 | 100 | -> | Plus |
| 2R | 12297266..12297339 | 857..930 | 100 | -> | Plus |
| 2R | 12297515..12297710 | 931..1128 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:19 Download gff for
BO28191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8167793..8168003 | 17..227 | 100 | -> | Plus |
| arm_2R | 8183843..8183970 | 228..355 | 100 | -> | Plus |
| arm_2R | 8184068..8184311 | 356..599 | 100 | -> | Plus |
| arm_2R | 8184376..8184490 | 600..714 | 100 | -> | Plus |
| arm_2R | 8184561..8184702 | 715..856 | 100 | -> | Plus |
| arm_2R | 8184771..8184844 | 857..930 | 100 | -> | Plus |
| arm_2R | 8185020..8185215 | 931..1128 | 98 | | Plus |
BO28191.pep Sequence
Translation from 16 to 1144
> BO28191.pep
MSERGSGGAVTGGRHARVSPTPGRGSKIAYTPCPRSEPPQDLALAVPPPP
RNCLAIPMSSLQTANGPGTKVNFGGGANSGVTRAEPISLATLDRDCFIIP
VHSVDRFLPAGIPLPALSADGKATSPLSVLEVSDPKLCILVHLMSPLEAI
DPVMESPLAHPLLKQRSIAAELVTEVQQANTAVGGMLLANMEKSSEFPFI
SYYLINTLQTDPSSFYAGLRVSSLSKFEPKALKYTAAHTLDLYSEVAAIC
RPPLVLPSNEVGSFKKSQTAATGYIISVFKVFEGDDGERFEKNWLYWTGA
RMLYRYLPRAAGLRRIALHKSTSQKGDKMYLLVCECAELLKDISLAAFLI
PALRARLCGYTGLYRPIQAFASFLDH
BO28191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42700-PJ | 370 | CG42700-PJ | 1..370 | 1..370 | 1909 | 100 | Plus |
| CG42700-PH | 370 | CG42700-PH | 1..370 | 1..370 | 1909 | 100 | Plus |
| CG42700-PC | 370 | CG42700-PC | 1..370 | 1..370 | 1909 | 100 | Plus |
| CG42700-PF | 364 | CG42700-PF | 56..364 | 65..370 | 1535 | 98.1 | Plus |
| CG42700-PE | 361 | CG42700-PE | 33..361 | 49..370 | 1531 | 93.3 | Plus |
